
PFRMAT AL
TARGET T0103
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1gci
K    6 A 1
G    7 Q 2
H    8 S 3
N    9 V 4
P   10 P 5
T   11 W 6
E   12 G 7
F   13 I 8
P   14 Q 12
T   15 A 13
I   16 P 14
Y   17 A 15
D   18 A 16
A   19 H 17
S   20 N 18
S   21 R 19
A   22 G 20
P   23 L 21
T   24 T 22
A   25 G 23
A   26 S 24
N   27 G 25
T   28 V 26
T   29 K 27
V   30 V 28
G   31 A 29
I   32 V 30
I   33 L 31
T   34 D 32
I   35 T 33
G   36 G 34
G   37 I 35
V   38 S 36
T   41 T 38
L   42 H 39
Q   43 P 40
D   44 D 41
L   45 L 42
Q   46 N 43
Q   47 I 44
F   48 R 45
T   49 G 46
S   50 G 47
A   51 A 48
N   52 S 49
G   53 F 50
L   54 V 51
A   55 P 52
S   56 G 53
V   57 E 54
N   58 P 55
T   59 S 56
I   62 T 57
Q   63 Q 59
T   64 D 60
G   65 G 61
S   66 N 62
S   67 G 63
N   68 H 64
G   69 G 65
D   70 T 66
Y   71 H 67
S   72 V 68
D   73 A 69
G   77 G 70
Q   78 T 71
G   79 I 72
E   80 A 73
W   81 A 74
D   82 L 75
L   83 N 76
D   84 N 77
S   85 S 78
Q   86 I 79
S   87 G 80
I   88 V 81
V   89 L 82
G   90 G 83
S   91 V 84
A   92 A 85
G   93 P 86
A   95 S 87
V   96 A 88
Q   97 E 89
Q   98 L 90
L   99 Y 91
L  100 A 92
F  101 V 93
Y  102 K 94
M  103 V 95
A  104 L 96
D  105 G 97
Q  106 A 98
S  107 S 99
A  108 G 100
S  109 S 101
G  110 G 102
N  111 S 103
T  112 V 104
G  113 S 105
L  114 S 106
T  115 I 107
Q  116 A 108
A  117 Q 109
F  118 G 110
N  119 L 111
Q  120 E 112
A  121 W 113
V  122 A 114
S  123 G 115
D  124 N 116
N  125 N 117
V  126 G 118
A  127 M 119
K  128 H 120
V  129 V 121
I  130 A 122
N  131 N 123
V  132 L 124
S  133 S 125
L  134 L 126
G  135 G 127
W  136 S 128
C  137 P 129
E  138 S 130
N  142 P 131
A  143 S 132
D  144 A 133
G  145 T 134
T  146 L 135
L  147 E 136
Q  148 Q 137
A  149 A 138
E  150 V 139
D  151 N 140
R  152 S 141
A  157 A 142
A  158 T 143
A  159 S 144
Q  160 R 145
G  161 G 146
Q  162 V 147
T  163 L 148
F  164 V 149
S  165 V 150
V  166 A 151
S  167 A 152
S  168 S 153
G  169 G 154
D  170 N 155
E  171 S 156
G  172 G 157
V  173 A 158
Y  174 G 163
S  188 S 164
V  189 I 165
S  190 S 166
W  191 Y 167
P  192 P 168
A  193 A 169
S  194 R 170
S  195 Y 171
P  196 A 172
N  197 N 173
V  198 A 174
I  199 M 175
A  200 A 176
V  201 V 177
G  202 G 178
G  203 A 179
T  204 T 180
T  209 D 181
S  210 Q 182
A  211 N 183
G  212 N 184
A  213 N 185
Y  214 R 186
S  215 A 187
N  216 S 188
E  217 F 189
T  218 S 190
V  219 Q 191
W  220 Y 192
N  221 G 193
E  222 A 194
G  223 G 195
L  224 L 196
D  225 D 197
S  248 I 198
V  249 V 199
V  250 A 200
S  251 P 201
G  252 G 202
T  253 V 203
P  254 N 204
G  255 V 205
R  256 Q 206
R  257 S 207
L  258 T 208
L  259 Y 209
P  260 P 210
G  271 G 211
A  272 S 212
L  273 T 213
I  274 Y 214
Q  281 A 215
Q  282 S 216
I  283 L 217
G  284 N 218
G  285 G 219
T  286 T 220
S  287 S 221
L  288 M 222
A  289 A 223
S  290 T 224
P  291 P 225
I  292 H 226
F  293 V 227
V  294 A 228
G  295 G 229
L  296 A 230
W  297 A 231
A  298 A 232
R  299 L 233
L  300 V 234
Q  301 K 235
S  302 Q 236
A  303 K 237
N  304 N 238
S  305 P 239
N  306 S 240
S  307 W 241
P  311 S 242
A  312 N 243
A  313 V 244
S  314 Q 245
F  315 I 246
Y  316 R 247
S  317 N 248
A  318 H 249
I  319 L 250
S  320 K 251
S  321 N 252
T  322 T 253
P  323 A 254
S  324 T 255
L  325 S 256
V  326 L 257
G  332 G 258
N  333 S 259
N  334 T 260
G  335 N 261
Y  336 L 262
G  337 Y 263
G  338 G 264
Y  339 S 265
G  340 G 266
Y  341 L 267
T  345 V 268
G  346 N 269
W  347 A 270
D  348 E 271
Y  349 A 272
P  350 A 273
T  351 T 274
G  352 R 275
TER
END

