
PFRMAT AL
TARGET T0103
AUTHOR 6305-9733-7289
REMARK Similar to 1mee (chain:A)
METHOD In an iterative SCANPS (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases, 1mee (chain:A) was identified as a possible homologue with
METHOD an E-value of 0.00337 in the first round.
METHOD After truncation of a possible C-terminal domain of the target sequence,
METHOD identified by a predicted transmembrane segment, the truncated sequence was aligned
METHOD to 1mee (chain:A) using secondary structure-dependent gap penalties.
METHOD This alignment was edited and corrected by hand in the Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
METHOD Secondary structure predicted for the target sequence by JPRED2
METHOD (Cuff & Barton, Proteins 40, 502-511, 2000) was taken into account.
MODEL  1
PARENT 1mee_A
A 1 A A1
A 2 Q A2
G 3 S A3
T 4 V A4
A 5 P A5
K 6 Y A6
G 7 G A7
H 8 I A8
N 9 S A9
P 10 Q A10
T 11 I A11
E 12 K A12
F 13 A A13
P 14 P A14
T 15 A A15
I 16 L A16
Y 17 H A17
D 18 S A18
A 25 G A23
A 26 S A24
N 27 N A25
T 28 V A26
T 29 K A27
V 30 V A28
G 31 A A29
I 32 V A30
I 33 I A31
T 34 D A32
I 35 S A33
S 39 D A36
Q 40 S A37
T 41 S A38
L 42 H A39
Q 43 P A40
D 44 D A41
F 48 V A44
T 49 R A45
S 50 G A46
A 51 G A47
N 52 A A48
G 53 S A49
L 54 F A50
A 55 V A51
S 56 P A52
V 57 S A53
N 58 E A54
T 59 T A55
Q 60 N A56
T 61 P A57
I 62 Y A58
Q 63 Q A59
T 64 D A60
G 65 G A61
S 66 S A62
S 67 S A63
N 68 H A64
G 69 G A65
D 70 T A66
Y 71 H A67
S 72 V A68
D 73 A A69
D 74 G A70
Q 75 T A71
Q 76 I A72
D 84 N A77
S 85 S A78
Q 86 I A79
S 87 G A80
I 88 V A81
V 89 L A82
G 90 G A83
S 91 V A84
A 92 A A85
V 96 A A88
Q 97 S A89
Q 98 L A90
L 99 Y A91
L 100 A A92
F 101 V A93
Y 102 K A94
M 103 V A95
A 104 L A96
D 105 D A97
Q 106 S A98
S 107 T A99
A 108 G A100
S 109 S A101
T 112 S A105
G 113 W A106
L 114 I A107
T 115 I A108
Q 116 N A109
A 117 G A110
F 118 I A111
N 119 E A112
Q 120 W A113
A 121 A A114
V 122 I A115
S 123 S A116
D 124 N A117
N 125 N A118
A 127 M A119
K 128 D A120
V 129 V A121
I 130 I A122
N 131 N A123
V 132 M A124
S 133 S A125
L 134 L A126
G 135 G A127
D 140 K A136
A 141 T A137
N 142 V A138
A 143 V A139
D 144 D A140
G 145 K A141
T 146 A A142
L 147 V A143
Q 148 S A144
A 149 S A145
E 150 G A146
D 151 I A147
R 152 V A148
I 153 V A149
F 154 A A150
A 155 A A151
T 156 A A152
A 157 A A153
A 158 G A154
A 159 N A155
Q 160 E A156
G 161 G A157
Q 162 S A158
T 163 S A159
F 164 G A160
S 165 S A161
V 166 T A162
S 167 S A163
D 170 Y A167
E 171 P A168
G 172 A A169
V 173 K A170
C 176 T A174
N 177 I A175
N 178 A A176
R 179 V A177
G 180 G A178
Y 181 A A179
P 182 V A180
D 183 N A181
G 184 S A182
S 185 A A183
T 186 N A184
Y 187 Q A185
S 188 R A186
V 189 A A187
S 190 S A188
W 191 F A189
S 194 G A193
S 195 S A194
P 196 E A195
N 197 L A196
V 198 D A197
I 199 V A198
A 200 M A199
V 201 A A200
G 202 P A201
G 203 G A202
T 204 V A203
T 205 S A204
L 206 I A205
Y 207 Q A206
T 208 S A207
T 209 T A208
S 210 L A209
E 217 Y A214
T 218 G A215
V 219 A A216
W 220 Y A217
N 227 M A222
G 228 A A223
K 229 T A224
L 230 P A225
W 231 H A226
A 232 V A227
T 233 A A228
G 234 G A229
G 235 A A230
G 236 A A231
Y 237 A A232
S 238 L A233
V 239 I A234
Y 240 L A235
E 241 S A236
S 242 K A237
K 243 H A238
P 244 P A239
S 245 T A240
W 246 W A241
Q 247 T A242
S 248 N A243
V 249 A A244
V 250 Q A245
S 251 V A246
G 252 R A247
T 253 D A248
P 254 R A249
G 255 L A250
R 256 E A251
R 257 S A252
L 258 T A253
L 259 A A254
P 260 T A255
D 261 Y A256
I 262 L A257
S 263 G A258
F 264 S A259
D 265 S A260
A 266 F A261
A 267 Y A262
Q 268 Y A263
G 269 G A264
T 270 K A265
G 271 G A266
A 272 L A267
L 273 I A268
I 274 N A269
Y 275 V A270
N 276 Q A271
Y 277 A A272
G 278 A A273
Q 279 A A274
L 280 Q A275
TER
END


