
PFRMAT SS
TARGET T0103
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0103.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 70.4321
METHOD
MODEL 1
A C 0.693
A C 0.632
G C 0.591
T C 0.538
A C 0.592
K C 0.791
G C 0.881
H C 0.896
N C 0.919
P C 0.860
T C 0.794
E C 0.765
F C 0.852
P C 0.850
T C 0.800
I C 0.733
Y C 0.665
D C 0.644
A C 0.511
S E 0.484
S E 0.606
A E 0.590
P E 0.587
T E 0.612
A E 0.625
A E 0.563
N C 0.798
T C 0.864
T C 0.656
V E 0.495
G E 0.604
I E 0.614
I E 0.549
T E 0.511
I E 0.491
G C 0.479
G C 0.445
V E 0.500
S E 0.563
Q E 0.495
T C 0.383
L H 0.422
Q H 0.416
D H 0.400
L H 0.773
Q H 0.809
Q H 0.853
F H 0.788
T H 0.666
S H 0.478
A C 0.536
N C 0.795
G C 0.678
L C 0.747
A C 0.775
S C 0.741
V C 0.694
N C 0.499
T E 0.921
Q E 0.949
T E 0.951
I E 0.953
Q E 0.912
T E 0.826
G E 0.560
S C 0.726
S C 0.855
N C 0.872
G C 0.859
D C 0.835
Y C 0.847
S C 0.822
D C 0.696
D C 0.600
Q C 0.551
Q C 0.645
G C 0.709
Q C 0.688
G C 0.470
E E 0.544
W E 0.629
D E 0.543
L C 0.454
D C 0.473
S E 0.440
Q E 0.533
S E 0.539
I E 0.480
V E 0.412
G C 0.430
S C 0.509
A C 0.689
G C 0.649
G C 0.587
A C 0.455
V H 0.376
Q E 0.405
Q E 0.491
L E 0.533
L E 0.560
F E 0.452
Y C 0.451
M C 0.632
A C 0.771
D C 0.690
Q C 0.585
S C 0.537
A C 0.536
S C 0.576
G C 0.506
N H 0.583
T H 0.846
G H 0.910
L H 0.936
T H 0.949
Q H 0.972
A H 0.976
F H 0.968
N H 0.966
Q H 0.960
A H 0.934
V H 0.835
S H 0.554
D C 0.686
N C 0.932
V C 0.819
A C 0.645
K E 0.584
V E 0.944
I E 0.974
N E 0.956
V E 0.894
S E 0.683
L C 0.564
G C 0.796
W C 0.789
C C 0.833
E C 0.831
A C 0.829
D C 0.735
A C 0.613
N C 0.550
A C 0.583
D C 0.612
G C 0.485
T H 0.655
L H 0.827
Q H 0.871
A H 0.894
E H 0.928
D H 0.949
R H 0.964
I H 0.972
F H 0.970
A H 0.980
T H 0.974
A H 0.978
A H 0.973
A H 0.949
Q H 0.762
G C 0.987
Q C 0.740
T E 0.891
F E 0.986
S E 0.992
V E 0.975
S E 0.854
S E 0.589
G C 0.710
D C 0.826
E C 0.880
G C 0.924
V C 0.869
Y C 0.823
E C 0.687
C C 0.625
N C 0.631
N C 0.691
R C 0.817
G C 0.814
Y C 0.796
P C 0.757
D C 0.862
G C 0.885
S C 0.897
T C 0.865
Y C 0.824
S C 0.847
V C 0.862
S C 0.848
W C 0.804
P C 0.838
A C 0.728
S C 0.768
S C 0.900
P C 0.849
N C 0.578
V E 0.823
I E 0.946
A E 0.977
V E 0.958
G E 0.916
G E 0.852
T E 0.749
T E 0.581
L C 0.729
Y C 0.821
T C 0.767
T C 0.679
S C 0.609
A C 0.622
G C 0.579
A C 0.449
Y E 0.471
S C 0.487
N C 0.632
E C 0.749
T C 0.537
V H 0.455
W H 0.528
N H 0.560
E H 0.550
G H 0.470
L H 0.374
D C 0.449
S C 0.627
N C 0.648
G C 0.556
K C 0.453
L E 0.455
W C 0.471
A C 0.622
T C 0.708
G C 0.765
G C 0.800
G C 0.726
Y C 0.626
S C 0.559
V C 0.533
Y C 0.554
E C 0.661
S C 0.735
K C 0.768
P C 0.732
S C 0.636
W C 0.524
Q H 0.482
S H 0.506
V H 0.512
V H 0.479
S H 0.449
G C 0.435
T C 0.411
P C 0.425
G C 0.489
R C 0.600
R C 0.605
L C 0.618
L C 0.709
P C 0.617
D E 0.564
I E 0.753
S E 0.837
F E 0.863
D E 0.711
A C 0.660
A C 0.913
Q C 0.910
G C 0.746
T C 0.516
G E 0.825
A E 0.894
L E 0.898
I E 0.806
Y E 0.656
N C 0.569
Y C 0.841
G C 0.863
Q C 0.753
L C 0.567
Q C 0.517
Q E 0.559
I C 0.491
G C 0.678
G C 0.604
T C 0.495
S C 0.425
L H 0.498
A H 0.591
S H 0.688
P H 0.859
I H 0.927
F H 0.979
V H 0.991
G H 0.996
L H 0.998
W H 0.999
A H 0.999
R H 0.997
L H 0.992
Q H 0.979
S H 0.911
A H 0.785
N H 0.509
S C 0.852
N C 0.910
S C 0.864
L C 0.807
G C 0.943
F C 0.910
P C 0.929
A H 0.925
A H 0.977
S H 0.988
F H 0.990
Y H 0.993
S H 0.993
A H 0.989
I H 0.980
S H 0.957
S H 0.878
T H 0.636
P H 0.548
S H 0.473
L C 0.464
V C 0.496
H C 0.605
D C 0.787
V C 0.669
K C 0.615
S C 0.653
G C 0.748
N C 0.795
N C 0.788
G C 0.630
Y C 0.441
G C 0.452
G C 0.579
Y C 0.694
G C 0.785
Y C 0.631
N C 0.587
A C 0.655
G C 0.669
T C 0.680
G C 0.811
W C 0.773
D C 0.815
Y C 0.744
P C 0.640
T C 0.611
G C 0.722
W C 0.651
G C 0.550
S C 0.481
L E 0.508
D C 0.724
I H 0.946
A H 0.969
K H 0.986
L H 0.969
S H 0.971
A H 0.970
Y H 0.971
I H 0.927
R H 0.829
S H 0.754
N C 0.857
G C 0.886
F C 0.889
G C 0.943
H C 0.944
END

