
PFRMAT AL
TARGET T0104
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.71 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: SRP54
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1ffh
M   1     K    62 
E   2     Q    63 
S   3     V    64 
L   4     L    65 
T   5     E    66 
Q   6     S    67 
Y   7     L    68 
I   8     T    69 
P   9     P    70 
D  10     A    71 
E  11     E    72 
F  12     V    73 
S  13     I    74 
M  14     L    75 
L  15     A    76 
R  16     T    77 
F  17     V    78 
G  18     Y    79 
K  19     E    80 
K  20     A    81 
F  21     L    82 
A  22     K    83 
E  23     E    84 
I  24     A    85 
L  25     L    86 
L  26     P    93 
K  27     V    94 
L  28     L    95 
H  29     K    96 
T  30     D    97 
A  33     R    98 
I  34     N    99 
M  35     L   100 
V  36     W   101 
Y  37     F   102 
L  38     L   103 
N  39     V   104 
G  40     G   105 
D  41     L   106 
L  42     Q   107 
G  43     G   108 
A  44     S   109 
G  45     G   110 
K  46     K   111 
T  47     T   112 
T  48     T   113 
L  49     T   114 
T  50     A   115 
R  51     A   116 
G  52     K   117 
M  53     L   118 
L  54     A   119 
Q  55     L   120 
G  56     Y   121 
I  57     Y   122 
G  58     K   123 
H  59     G   124 
Q  60     K   125 
G  61     G   126 
K  64     R   127 
S  65     R   128 
P  66     P   129 
T  67     L   130 
Y  68     L   131 
T  69     V   132 
L  70     A   133 
V  71     A   134 
E  72     D   135 
E  73     T   136 
Y  74     Q   137 
N  75     R   138 
I  76     P   139 
A  77     A   140 
G  78     A   141 
K  79     R   142 
M  80     E   143 
I  81     Q   144 
Y  82     L   145 
H  83     R   146 
F  84     L   147 
D  85     L   148 
L  86     G   149 
Y  87     E   150 
R  88     K   151 
L  89     R   169 
A  90     R   170 
D  91     R   171 
P  92     V   172 
E  93     E   173 
E  94     E   174 
L  95     K   175 
E  96     A   176 
F  97     R   177 
M  98     L   178 
G  99     E   179 
I 100     A   180 
R 101     R   181 
D 102     D   182 
Y 103     L   183 
F 104     I   184 
N 105     L   185 
T 106     V   186 
D 107     D   187 
S 108     T   188 
I 109     A   189 
C 110     G   190 
L 111     R   191 
I 112     L   192 
E 113     Q   193 
W 114     I   194 
S 115     D   195 
E 116     E   196 
K 117     P   197 
G 118     L   198 
Q 119     M   199 
G 120     G   200 
I 121     E   201 
L 122     L   202 
P 123     A   203 
E 124     R   204 
A 125     L   205 
D 126     K   206 
I 127     E   207 
L 128     V   208 
V 129     L   209 
D 136     G   210 
A 137     P   211 
R 138     D   212 
N 139     E   213 
I 140     V   214 
E 141     L   215 
L 142     L   216 
I 143     V   217 
A 144     L   218 
Q 145     D   219 
T 146     A   220 
N 147     M   221 
L 148     T   222 
G 149     G   223 
K 150     Q   224 
N 151     E   225 
I 152     A   226 
I 153     L   227 
S 154     S   228 
A 155     V   229 
F 156     A   230 
S 157     R   231 
N 158     A   232 
TER
END

