
PFRMAT AL
TARGET T0104
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1b4a_A
G   18 G 4
K   19 I 8
K   20 K 9
F   21 I 10
A   22 R 11
E   23 E 12
I   24 I 13
L   25 I 14
L   26 M 15
K   27 D 18
L   28 I 19
H   29 E 20
T   30 T 21
E   31 Q 22
K   32 D 23
A   33 E 24
I   34 L 25
M   35 V 26
V   36 D 27
Y   37 R 28
L   38 L 29
N   39 R 30
G   40 E 31
D   41 A 32
L   42 F 34
G   43 N 35
A   44 V 36
G   45 T 37
K   46 Q 38
T   47 A 39
T   48 T 40
L   49 V 41
T   50 S 42
R   51 R 43
M   53 D 44
L   54 I 45
Q   55 K 46
G   56 E 47
I   57 M 48
G   58 Q 49
L   70 L 50
V   71 V 51
E   72 K 52
E   73 V 53
Y   74 P 54
N   75 M 55
I   76 A 56
A   77 N 57
G   78 G 58
K   79 R 59
M   80 Y 60
I   81 K 61
Y   82 Y 62
H   83 S 63
F   84 L 64
D   85 P 65
L   86 S 66
Y   87 D 67
R   88 Q 68
L   89 R 69
A   90 F 70
D   91 N 71
P   92 P 72
E   93 L 73
E   94 Q 74
L   95 K 75
E   96 L 76
F   97 K 77
M   98 R 78
G   99 A 79
I  100 L 80
R  101 V 81
D  102 D 82
Y  103 V 83
F  104 F 84
N  105 T 90
T  106 G 91
D  107 N 92
S  108 L 93
I  109 L 94
C  110 V 95
L  111 L 96
I  112 R 97
E  113 T 98
W  114 L 99
S  115 P 100
E  116 G 101
K  117 N 102
G  118 A 103
Q  119 H 104
G  120 A 105
I  121 I 106
L  122 L 113
P  123 D 114
E  124 W 115
A  125 D 116
D  126 E 117
I  127 I 118
L  128 V 119
V  129 G 120
N  130 T 121
I  131 I 122
Y  133 C 123
Y  134 G 124
D  135 D 125
D  136 D 126
N  139 T 127
I  140 C 128
E  141 L 129
L  142 I 130
I  143 I 131
A  144 C 132
Q  145 R 133
T  146 T 134
N  147 K 136
L  148 D 137
G  149 A 138
K  150 K 139
N  151 K 140
I  152 V 141
I  153 L 145
S  154 L 146
A  155 S 147
F  156 M 148
S  157 L 149
TER
END

