
PFRMAT AL
TARGET T0104
AUTHOR 1205-3016-5241
METHOD Using a database which X'ed out sequence regions within coiled-coils,
METHOD transmembrane, and low entropy, SENSER was able to identify a relationship
METHOD between Haemophilus influenzae HI0065 and the F chain of HEAT SHOCK LOCUS U
METHOD through recursive searching. An alignment
METHOD was automatically generated with HMMer using profiles
METHOD of the target and pdb families.
MODEL 1
PARENT 1dooF
M   1    A  28
E   2    I  29
S   3    A  30
L   4    L  31
T   5    R  32
Q   6    N  33
Y   7    R  34
I   8    W  35
P   9    R  36
D  10    R  37
E  11    M  38
F  12    Q  39
S  13    L  40
M  14    N  41
L  15    E  42
R  16    E  43
L  26    L  44
K  27    R  45
L  28    H  46
H  29    E  47
T  30    V  48
E  31    T  49
K  32    P  50
A  33    K  51
I  34    N  52
V  36    I  53
Y  37    L  54
L  38    M  55
N  39    I  56
G  40    G  57
D  41    P  58
L  42    T  59
G  43    G  60
A  44    V  61
G  45    G  62
K  46    K  63
T  47    T  64
T  48    E  65
L  49    I  66
T  50    A  67
R  51    R  68
G  52    R  69
M  53    L  70
L  54    A  71
Q  55    K  72
G  56    L  73
I  57    A  74
G  58    N  75
H  59    A  76
Q  60    P  77
G  61    F  78
N  62    I  79
V  63    K  80
K  64    V  81
S  65    E  88
P  66    V  89
T  67    G  90
Y  68    Y  91
T  69    V  92
L  70    G  93
V  71    K  94
E  72    E  95
E  73    V  96
Y  74    D  97
N  75    S  98
I  76    I  99
A  77    I 100
K 117    D 105
G 118    A 106
Q 119    A 107
G 120    V 108
I 121    K 109
L 128    M 110
V 129    V 111
N 130    R 112
I 131    V 113
D 132    Q 114
Y 133    A 115
Y 134    I 116
D 135    E 117
D 136    K 118
A 137    N 119
T 146    R 120
N 147    Y 121
L 148    R 122
G 149    A 123
K 150    E 124
N 151    E 125
I 152    L 126
I 153    A 127
S 154    E 128
A 155    E 129
TER
END

