
PFRMAT TS 
TARGET T0104
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 120 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD The z scores of all the lowest energy structures were calculated.
METHOD As a control secondary structure was predicted using NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
METHOD The most stable 49-residue fragment was chosen for the prediction.
MODEL 1
PARENT 2cyp
ATOM      1  N   ARG    88      33.583  95.438  41.975  1.00  0.00          N
ATOM      2  CA  ARG    88      32.799  94.199  42.202  1.00  0.00          C
ATOM      3  C   ARG    88      33.694  93.113  42.786  1.00  0.00          C
ATOM      4  O   ARG    88      34.927  93.231  42.660  1.00  0.00          O
ATOM      5  N   LEU    89      33.089  92.043  43.239  1.00  0.00          N
ATOM      6  CA  LEU    89      33.770  90.894  43.811  1.00  0.00          C
ATOM      7  C   LEU    89      34.007  89.883  42.744  1.00  0.00          C
ATOM      8  O   LEU    89      34.730  88.912  43.012  1.00  0.00          O
ATOM      9  N   ALA    90      33.329  89.993  41.612  1.00  0.00          N
ATOM     10  CA  ALA    90      33.378  88.879  40.634  1.00  0.00          C
ATOM     11  C   ALA    90      32.692  89.280  39.346  1.00  0.00          C
ATOM     12  O   ALA    90      32.268  90.446  39.294  1.00  0.00          O
ATOM     13  N   ASP    91      32.564  88.398  38.412  1.00  0.00          N
ATOM     14  CA  ASP    91      32.010  88.668  37.069  1.00  0.00          C
ATOM     15  C   ASP    91      30.476  88.552  36.968  1.00  0.00          C
ATOM     16  O   ASP    91      29.962  89.436  36.286  1.00  0.00          O
ATOM     17  N   PRO    92      29.860  87.573  37.543  1.00  0.00          N
ATOM     18  CA  PRO    92      28.362  87.412  37.394  1.00  0.00          C
ATOM     19  C   PRO    92      27.754  88.075  38.639  1.00  0.00          C
ATOM     20  O   PRO    92      27.526  87.387  39.652  1.00  0.00          O
ATOM     21  N   GLU    93      27.580  89.343  38.575  1.00  0.00          N
ATOM     22  CA  GLU    93      27.188  90.184  39.724  1.00  0.00          C
ATOM     23  C   GLU    93      25.669  90.024  40.067  1.00  0.00          C
ATOM     24  O   GLU    93      25.260  90.611  41.093  1.00  0.00          O
ATOM     25  N   GLU    94      24.994  89.348  39.149  1.00  0.00          N
ATOM     26  CA  GLU    94      23.509  89.294  39.472  1.00  0.00          C
ATOM     27  C   GLU    94      23.040  87.882  39.304  1.00  0.00          C
ATOM     28  O   GLU    94      21.833  87.741  39.065  1.00  0.00          O
ATOM     29  N   LEU    95      23.927  86.921  39.393  1.00  0.00          N
ATOM     30  CA  LEU    95      23.552  85.509  39.430  1.00  0.00          C
ATOM     31  C   LEU    95      24.119  84.947  40.728  1.00  0.00          C
ATOM     32  O   LEU    95      25.291  85.311  41.070  1.00  0.00          O
ATOM     33  N   GLU    96      23.314  84.288  41.506  1.00  0.00          N
ATOM     34  CA  GLU    96      23.748  83.731  42.798  1.00  0.00          C
ATOM     35  C   GLU    96      24.527  82.423  42.546  1.00  0.00          C
ATOM     36  O   GLU    96      24.062  81.370  42.140  1.00  0.00          O
ATOM     37  N   PHE    97      25.840  82.487  42.887  1.00  0.00          N
ATOM     38  CA  PHE    97      26.722  81.281  42.765  1.00  0.00          C
ATOM     39  C   PHE    97      27.773  81.312  43.902  1.00  0.00          C
ATOM     40  O   PHE    97      27.737  82.268  44.694  1.00  0.00          O
ATOM     41  N   MET    98      28.672  80.351  43.843  1.00  0.00          N
ATOM     42  CA  MET    98      29.729  80.258  44.888  1.00  0.00          C
ATOM     43  C   MET    98      30.957  80.976  44.337  1.00  0.00          C
ATOM     44  O   MET    98      32.037  80.670  44.866  1.00  0.00          O
ATOM     45  N   GLY    99      30.799  81.867  43.412  1.00  0.00          N
ATOM     46  CA  GLY    99      31.888  82.608  42.824  1.00  0.00          C
ATOM     47  C   GLY    99      32.758  83.355  43.795  1.00  0.00          C
ATOM     48  O   GLY    99      34.002  83.445  43.610  1.00  0.00          O
ATOM     49  N   ILE   100      32.200  83.860  44.896  1.00  0.00          N
ATOM     50  CA  ILE   100      32.978  84.497  45.903  1.00  0.00          C
ATOM     51  C   ILE   100      34.204  83.700  46.415  1.00  0.00          C
ATOM     52  O   ILE   100      35.245  84.326  46.547  1.00  0.00          O
ATOM     53  N   ARG   101      33.991  82.467  46.734  1.00  0.00          N
ATOM     54  CA  ARG   101      34.931  81.545  47.305  1.00  0.00          C
ATOM     55  C   ARG   101      36.003  81.155  46.273  1.00  0.00          C
ATOM     56  O   ARG   101      37.213  81.168  46.615  1.00  0.00          O
ATOM     57  N   ASP   102      35.510  80.862  45.091  1.00  0.00          N
ATOM     58  CA  ASP   102      36.398  80.616  43.941  1.00  0.00          C
ATOM     59  C   ASP   102      37.334  81.799  43.766  1.00  0.00          C
ATOM     60  O   ASP   102      38.553  81.551  43.584  1.00  0.00          O
ATOM     61  N   TYR   103      36.873  82.993  43.654  1.00  0.00          N
ATOM     62  CA  TYR   103      37.624  84.197  43.469  1.00  0.00          C
ATOM     63  C   TYR   103      38.659  84.385  44.578  1.00  0.00          C
ATOM     64  O   TYR   103      39.824  84.687  44.266  1.00  0.00          O
ATOM     65  N   PHE   104      38.254  84.200  45.793  1.00  0.00          N
ATOM     66  CA  PHE   104      39.168  84.442  46.924  1.00  0.00          C
ATOM     67  C   PHE   104      40.367  83.511  46.838  1.00  0.00          C
ATOM     68  O   PHE   104      41.511  83.951  47.186  1.00  0.00          O
ATOM     69  N   ASN   105      40.142  82.257  46.605  1.00  0.00          N
ATOM     70  CA  ASN   105      41.172  81.224  46.544  1.00  0.00          C
ATOM     71  C   ASN   105      41.984  81.282  45.248  1.00  0.00          C
ATOM     72  O   ASN   105      43.059  80.663  45.255  1.00  0.00          O
ATOM     73  N   THR   106      41.507  81.774  44.141  1.00  0.00          N
ATOM     74  CA  THR   106      42.090  81.687  42.847  1.00  0.00          C
ATOM     75  C   THR   106      42.704  82.954  42.293  1.00  0.00          C
ATOM     76  O   THR   106      43.493  82.778  41.327  1.00  0.00          O
ATOM     77  N   ASP   107      42.302  84.100  42.720  1.00  0.00          N
ATOM     78  CA  ASP   107      42.826  85.341  42.133  1.00  0.00          C
ATOM     79  C   ASP   107      44.118  85.689  42.863  1.00  0.00          C
ATOM     80  O   ASP   107      44.331  85.168  43.969  1.00  0.00          O
ATOM     81  N   SER   108      44.886  86.555  42.241  1.00  0.00          N
ATOM     82  CA  SER   108      46.151  87.019  42.905  1.00  0.00          C
ATOM     83  C   SER   108      45.760  88.330  43.522  1.00  0.00          C
ATOM     84  O   SER   108      45.539  89.199  42.636  1.00  0.00          O
ATOM     85  N   ILE   109      45.626  88.502  44.805  1.00  0.00          N
ATOM     86  CA  ILE   109      45.165  89.823  45.269  1.00  0.00          C
ATOM     87  C   ILE   109      46.380  90.677  45.598  1.00  0.00          C
ATOM     88  O   ILE   109      47.297  90.075  46.200  1.00  0.00          O
ATOM     89  N   CYS   110      46.240  91.955  45.447  1.00  0.00          N
ATOM     90  CA  CYS   110      47.231  92.953  45.768  1.00  0.00          C
ATOM     91  C   CYS   110      46.588  94.003  46.661  1.00  0.00          C
ATOM     92  O   CYS   110      45.514  94.533  46.331  1.00  0.00          O
ATOM     93  N   LEU   111      47.240  94.276  47.771  1.00  0.00          N
ATOM     94  CA  LEU   111      46.767  95.300  48.694  1.00  0.00          C
ATOM     95  C   LEU   111      47.008  96.651  48.082  1.00  0.00          C
ATOM     96  O   LEU   111      48.204  97.026  48.001  1.00  0.00          O
ATOM     97  N   ILE   112      45.944  97.357  47.730  1.00  0.00          N
ATOM     98  CA  ILE   112      46.001  98.675  47.164  1.00  0.00          C
ATOM     99  C   ILE   112      45.173  99.661  47.913  1.00  0.00          C
ATOM    100  O   ILE   112      44.337  99.297  48.744  1.00  0.00          O
ATOM    101  N   GLU   113      45.340 100.897  47.622  1.00  0.00          N
ATOM    102  CA  GLU   113      44.609 102.012  48.236  1.00  0.00          C
ATOM    103  C   GLU   113      43.776 102.720  47.183  1.00  0.00          C
ATOM    104  O   GLU   113      44.282 102.897  46.066  1.00  0.00          O
ATOM    105  N   TRP   114      42.469 102.892  47.495  1.00  0.00          N
ATOM    106  CA  TRP   114      41.556 103.439  46.470  1.00  0.00          C
ATOM    107  C   TRP   114      41.417 104.945  46.589  1.00  0.00          C
ATOM    108  O   TRP   114      41.967 105.558  47.536  1.00  0.00          O
ATOM    109  N   SER   115      40.623 105.534  45.713  1.00  0.00          N
ATOM    110  CA  SER   115      40.421 106.972  45.667  1.00  0.00          C
ATOM    111  C   SER   115      39.892 107.545  46.947  1.00  0.00          C
ATOM    112  O   SER   115      39.893 108.788  47.105  1.00  0.00          O
ATOM    113  N   GLU   116      39.373 106.703  47.807  1.00  0.00          N
ATOM    114  CA  GLU   116      38.874 107.185  49.094  1.00  0.00          C
ATOM    115  C   GLU   116      39.962 107.049  50.142  1.00  0.00          C
ATOM    116  O   GLU   116      39.636 107.310  51.326  1.00  0.00          O
ATOM    117  N   LYS   117      41.183 106.602  49.769  1.00  0.00          N
ATOM    118  CA  LYS   117      42.247 106.442  50.760  1.00  0.00          C
ATOM    119  C   LYS   117      42.087 105.217  51.634  1.00  0.00          C
ATOM    120  O   LYS   117      42.635 105.177  52.759  1.00  0.00          O
ATOM    121  N   GLY   118      41.289 104.262  51.211  1.00  0.00          N
ATOM    122  CA  GLY   118      41.026 103.060  52.015  1.00  0.00          C
ATOM    123  C   GLY   118      41.751 101.916  51.324  1.00  0.00          C
ATOM    124  O   GLY   118      41.817 101.950  50.102  1.00  0.00          O
ATOM    125  N   GLN   119      42.256 101.030  52.140  1.00  0.00          N
ATOM    126  CA  GLN   119      42.924  99.875  51.475  1.00  0.00          C
ATOM    127  C   GLN   119      41.920  98.793  51.109  1.00  0.00          C
ATOM    128  O   GLN   119      41.047  98.507  51.950  1.00  0.00          O
ATOM    129  N   GLY   120      42.056  98.216  49.926  1.00  0.00          N
ATOM    130  CA  GLY   120      41.308  97.015  49.555  1.00  0.00          C
ATOM    131  C   GLY   120      42.161  96.154  48.662  1.00  0.00          C
ATOM    132  O   GLY   120      43.148  96.630  48.058  1.00  0.00          O
ATOM    133  N   ILE   121      41.872  94.887  48.646  1.00  0.00          N
ATOM    134  CA  ILE   121      42.470  93.868  47.817  1.00  0.00          C
ATOM    135  C   ILE   121      41.916  93.951  46.411  1.00  0.00          C
ATOM    136  O   ILE   121      40.672  93.694  46.228  1.00  0.00          O
ATOM    137  N   LEU   122      42.801  94.074  45.446  1.00  0.00          N
ATOM    138  CA  LEU   122      42.494  94.179  44.011  1.00  0.00          C
ATOM    139  C   LEU   122      43.088  93.009  43.239  1.00  0.00          C
ATOM    140  O   LEU   122      44.174  92.503  43.564  1.00  0.00          O
ATOM    141  N   PRO   123      42.431  92.498  42.226  1.00  0.00          N
ATOM    142  CA  PRO   123      42.883  91.405  41.374  1.00  0.00          C
ATOM    143  C   PRO   123      43.083  91.985  39.963  1.00  0.00          C
ATOM    144  O   PRO   123      42.416  92.958  39.595  1.00  0.00          O
ATOM    145  N   GLU   124      43.882  91.274  39.211  1.00  0.00          N
ATOM    146  CA  GLU   124      44.180  91.644  37.810  1.00  0.00          C
ATOM    147  C   GLU   124      42.956  91.499  36.909  1.00  0.00          C
ATOM    148  O   GLU   124      42.856  92.207  35.887  1.00  0.00          O
ATOM    149  N   ALA   125      42.011  90.649  37.297  1.00  0.00          N
ATOM    150  CA  ALA   125      40.767  90.458  36.519  1.00  0.00          C
ATOM    151  C   ALA   125      39.791  91.621  36.688  1.00  0.00          C
ATOM    152  O   ALA   125      38.727  91.594  36.054  1.00  0.00          O
ATOM    153  N   ASP   126      40.078  92.525  37.581  1.00  0.00          N
ATOM    154  CA  ASP   126      39.167  93.615  37.934  1.00  0.00          C
ATOM    155  C   ASP   126      38.302  93.388  39.171  1.00  0.00          C
ATOM    156  O   ASP   126      37.340  94.197  39.298  1.00  0.00          O
ATOM    157  N   ILE   127      38.600  92.465  40.063  1.00  0.00          N
ATOM    158  CA  ILE   127      37.775  92.289  41.272  1.00  0.00          C
ATOM    159  C   ILE   127      38.376  92.919  42.480  1.00  0.00          C
ATOM    160  O   ILE   127      39.565  93.291  42.386  1.00  0.00          O
ATOM    161  N   LEU   128      37.598  93.016  43.525  1.00  0.00          N
ATOM    162  CA  LEU   128      38.018  93.599  44.792  1.00  0.00          C
ATOM    163  C   LEU   128      37.553  92.640  45.883  1.00  0.00          C
ATOM    164  O   LEU   128      36.586  91.854  45.696  1.00  0.00          O
ATOM    165  N   VAL   129      38.232  92.762  47.010  1.00  0.00          N
ATOM    166  CA  VAL   129      37.909  92.102  48.230  1.00  0.00          C
ATOM    167  C   VAL   129      37.973  93.131  49.314  1.00  0.00          C
ATOM    168  O   VAL   129      39.060  93.841  49.377  1.00  0.00          O
ATOM    169  N   ASN   130      37.022  93.207  50.240  1.00  0.00          N
ATOM    170  CA  ASN   130      37.181  94.090  51.403  1.00  0.00          C
ATOM    171  C   ASN   130      38.204  93.374  52.324  1.00  0.00          C
ATOM    172  O   ASN   130      38.396  92.163  52.288  1.00  0.00          O
ATOM    173  N   ILE   131      38.835  94.099  53.215  1.00  0.00          N
ATOM    174  CA  ILE   131      39.685  93.518  54.258  1.00  0.00          C
ATOM    175  C   ILE   131      38.925  92.421  54.996  1.00  0.00          C
ATOM    176  O   ILE   131      39.482  91.361  55.334  1.00  0.00          O
ATOM    177  N   ASP   132      37.611  92.619  55.303  1.00  0.00          N
ATOM    178  CA  ASP   132      36.822  91.602  56.013  1.00  0.00          C
ATOM    179  C   ASP   132      36.608  90.451  55.114  1.00  0.00          C
ATOM    180  O   ASP   132      36.486  89.294  55.702  1.00  0.00          O
ATOM    181  N   TYR   133      36.473  90.488  53.799  1.00  0.00          N
ATOM    182  CA  TYR   133      36.352  89.340  52.933  1.00  0.00          C
ATOM    183  C   TYR   133      37.667  88.531  52.949  1.00  0.00          C
ATOM    184  O   TYR   133      37.741  87.299  52.915  1.00  0.00          O
ATOM    185  N   TYR   134      38.775  89.284  52.803  1.00  0.00          N
ATOM    186  CA  TYR   134      40.103  88.618  52.706  1.00  0.00          C
ATOM    187  C   TYR   134      40.490  87.883  53.968  1.00  0.00          C
ATOM    188  O   TYR   134      41.122  86.808  53.931  1.00  0.00          O
ATOM    189  N   ASP   135      40.015  88.349  55.090  1.00  0.00          N
ATOM    190  CA  ASP   135      40.175  87.766  56.406  1.00  0.00          C
ATOM    191  C   ASP   135      39.719  86.336  56.490  1.00  0.00          C
ATOM    192  O   ASP   135      40.279  85.444  57.196  1.00  0.00          O
ATOM    193  N   ASP   136      38.799  85.953  55.590  1.00  0.00          N
ATOM    194  CA  ASP   136      38.284  84.551  55.557  1.00  0.00          C
ATOM    195  C   ASP   136      39.345  83.552  55.108  1.00  0.00          C
ATOM    196  O   ASP   136      39.207  82.351  55.372  1.00  0.00          O
TER
END


