
PFRMAT AL
TARGET T0104
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1hgx_A
M    1 M 7
E    2 D 8
S    3 D 9
L    4 L 10
T    5 E 11
Q    6 R 12
Y    7 V 13
I    8 L 14
P    9 Y 15
D   10 N 16
E   11 Q 17
F   12 D 18
S   13 D 19
M   14 I 20
L   15 Q 21
R   16 K 22
F   17 R 23
G   18 I 24
K   19 R 25
K   20 E 26
F   21 L 27
A   22 A 28
E   23 A 29
I   24 E 30
L   25 L 31
L   26 T 32
K   27 E 33
L   28 F 34
H   29 Y 35
T   30 E 36
E   31 D 37
K   32 K 38
A   33 N 39
I   34 P 40
M   35 V 41
V   36 M 42
N   39 I 43
G   40 C 44
D   41 V 45
L   42 L 46
G   43 T 47
A   44 G 48
G   45 A 49
T   47 V 50
T   48 F 51
L   49 F 52
T   50 Y 53
R   51 T 54
G   52 D 55
M   53 L 56
L   54 L 57
Q   55 K 58
G   56 H 59
I   57 L 60
G   58 D 61
H   59 F 62
Q   60 Q 63
G   61 I 69
N   62 I 70
V   63 C 71
K   64 S 72
S   65 S 73
P   66 L 83
T   67 T 84
Y   68 I 85
T   69 S 86
L   70 K 87
V   71 D 88
E   72 L 89
E   73 K 90
Y   74 T 91
N   75 N 92
I   76 I 93
A   77 E 94
G   78 G 95
K   79 R 96
M   80 H 97
I   81 V 98
Y   82 L 99
H   83 V 100
F   84 V 101
D   85 E 102
L   86 D 103
Y   87 I 104
L   89 I 105
A   90 D 106
D   91 T 107
P   92 G 108
E   93 L 109
E   94 T 110
L   95 M 111
E   96 Q 113
F   97 L 114
M   98 L 115
G   99 N 116
I  100 N 117
R  101 L 118
D  102 Q 119
Y  103 M 120
F  104 R 121
N  105 K 122
T  106 P 123
D  107 A 124
S  108 S 125
I  109 C 129
C  110 T 130
L  111 L 131
I  112 C 132
E  113 D 133
S  115 K 134
E  116 D 135
K  117 I 136
G  118 G 137
Q  119 K 138
G  120 K 139
I  121 A 140
L  122 Y 141
P  123 D 142
E  124 V 143
A  125 P 144
D  126 I 145
I  127 D 146
L  128 Y 147
V  129 C 148
N  130 G 149
I  131 F 150
D  132 V 151
Y  133 V 152
Y  134 E 153
D  135 N 154
D  136 K 167
A  137 Y 168
R  138 R 169
N  139 N 170
I  140 L 171
E  141 V 173
L  142 I 174
I  143 G 175
A  144 I 176
Q  145 L 177
T  146 K 178
N  147 E 179
TER
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