
PFRMAT AL
TARGET T0104
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1c1y_A
E   31 M 1
K   32 R 2
A   33 E 3
I   34 Y 4
M   35 K 5
V   36 L 6
Y   37 V 7
L   38 V 8
N   39 L 9
G   40 G 10
D   41 S 11
L   42 G 12
G   43 G 13
A   44 V 14
G   45 G 15
K   46 K 16
T   47 S 17
T   48 A 18
L   49 L 19
T   50 T 20
R   51 V 21
G   52 Q 22
M   53 F 23
L   54 V 24
Q   55 Q 25
G   56 G 26
I   57 I 27
G   58 F 28
H   59 V 29
Q   60 E 30
G   61 K 31
N   62 Y 32
V   63 D 33
K   64 P 34
S   65 T 35
P   66 I 36
T   67 E 37
Y   68 D 38
T   69 S 39
L   70 Y 40
V   71 R 41
E   72 K 42
E   73 Q 43
Y   74 V 44
N   75 E 45
I   76 V 46
A   77 D 47
G   78 C 48
K   79 Q 49
M   80 M 52
I   81 L 53
Y   82 E 54
H   83 I 55
F   84 L 56
D   85 D 57
L   86 T 58
Y   87 Y 82
R   88 S 83
L   89 I 84
A   90 T 85
D   91 A 86
P   92 Q 87
E   93 D 92
E   94 L 93
L   95 Q 94
E   96 D 95
F   97 L 96
M   98 R 97
G   99 Q 99
I  100 I 100
R  101 L 101
D  102 R 102
Y  103 V 103
F  104 K 104
N  105 D 105
T  106 T 106
D  107 E 107
S  108 D 108
I  109 L 113
C  110 V 114
L  111 G 115
I  112 N 116
E  113 K 117
W  114 C 118
S  115 D 119
E  116 L 120
K  117 E 121
G  118 D 122
Q  119 E 123
G  120 R 124
I  121 V 125
L  122 V 126
P  123 G 127
E  124 K 128
A  125 E 129
D  126 Q 130
I  127 G 131
L  128 Q 132
V  129 N 133
N  130 L 134
I  131 A 135
D  132 R 136
Y  133 Q 137
Y  134 W 138
D  135 C 139
D  136 N 140
A  137 C 141
R  138 A 142
N  139 F 143
I  140 L 144
E  141 E 145
L  142 S 146
I  143 S 147
A  144 A 148
Q  145 K 151
T  146 I 152
N  147 N 153
L  148 V 154
G  149 N 155
K  150 E 156
N  151 D 160
I  152 L 161
I  153 V 162
S  154 R 163
A  155 Q 164
F  156 I 165
S  157 N 166
N  158 R 167
TER
END

