
PFRMAT AL
TARGET T0104
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1hur_A
G  18    G   2
K  19    N   3
K  20    I   4
F  21    F   5
A  22    A   6
E  23    N   7
I  24    L   8
L  25    F   9
L  26    K  10
K  27    G  11
L  28    L  12
H  29    F  13
T  30    G  14
E  31    K  15
K  32    K  16
A  33    E  17
I  34    M  18
M  35    R  19
V  36    I  20
Y  37    L  21
L  38    M  22
N  39    V  23
G  40    G  24
D  41    L  25
L  42    D  26
G  43    A  27
A  44    A  28
G  45    G  29
K  46    K  30
T  47    T  31
T  48    T  32
L  49    I  33
T  50    L  34
R  51    Y  35
G  52    K  36
M  53    L  37
L  54    K  38
Q  55    L  39
G  56    G  40
P  66    P  47
T  67    T  48
Y  68    I  49
T  69    G  50
L  70    F  51
V  71    N  52
E  72    V  53
E  73    E  54
N  75    T  55
I  76    V  56
A  77    E  57
G  78    Y  58
K  79    K  59
M  80    N  60
I  81    I  61
H  83    S  62
F  84    F  63
D  85    T  64
L  86    V  65
Y  87    W  66
R  88    D  67
L  89    V  68
A  90    G  69
D  91    G  70
P  92    Q  71
E  93    D  72
E  94    K  73
L  95    I  74
E  96    R  75
F  97    P  76
M  98    L  77
G  99    W  78
R 101    R  79
D 102    H  80
Y 103    Y  81
F 104    F  82
N 105    N  84
T 106    T  85
D 107    Q  86
S 108    G  87
I 109    L  88
C 110    I  89
L 111    F  90
I 112    V  91
E 113    V  92
W 114    D  93
S 115    S  94
E 116    N  95
K 117    D  96
G 118    R  97
Q 119    E  98
D 126    E 105
I 127    E 106
L 128    L 107
V 129    M 108
N 130    R 109
I 131    M 110
D 132    L 111
Y 133    A 112
Y 134    E 113
D 135    D 114
D 136    E 115
A 137    L 116
R 138    R 117
N 139    D 118
I 140    A 119
E 141    V 120
L 142    L 121
I 143    L 122
A 144    V 123
Q 145    F 124
T 146    A 125
N 147    N 126
TER
END


