
PFRMAT AL
TARGET T0104
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1fsz
G  18    S  23
K  19    P  24
K  20    E  25
F  21    D  26
A  22    K  27
E  23    E  28
I  24    L  29
L  25    L  30
L  26    E  31
K  27    Y  32
L  28    L  33
H  29    Q  34
T  30    Q  35
E  31    T  36
K  32    K  37
A  33    A  38
I  34    K  39
M  35    I  40
V  36    T  41
Y  37    V  42
L  38    V  43
G  40    G  44
D  41    C  45
L  42    G  46
G  43    G  47
A  44    A  48
G  45    G  49
K  46    N  50
T  47    N  51
T  48    T  52
L  49    I  53
T  50    T  54
R  51    R  55
G  52    L  56
M  53    K  57
L  54    M  58
Q  55    E  59
G  56    G  60
I  57    I  61
G  58    E  62
H  59    G  63
Q  60    A  64
G  61    K  65
N  62    T  66
V  63    V  67
K  64    A  68
S  65    I  69
P  66    N  70
T  67    T  71
Y  68    D  72
T  69    A  73
N  75    T  79
I  76    K  80
A  77    A  81
G  78    D  82
K  79    K  83
M  80    K  84
I  81    I  85
Y  82    L  86
H  83    I  87
F  84    K  89
D  85    K  90
L  86    L  91
Y  87    T  92
R  88    R  93
L  89    L  95
A  90    G  96
D  91    A  97
P  92    G  98
E  93    A 108
E  94    K 109
L  95    E 110
E  96    S 111
F  97    A 112
M  98    E 113
G  99    E 114
I 100    I 115
R 101    K 116
D 102    A 117
Y 103    A 118
F 104    I 119
N 105    Q 120
T 106    D 121
D 107    S 122
S 108    D 123
I 109    M 124
C 110    V 125
L 111    F 126
I 112    I 127
E 113    T 128
P 123    G 138
E 124    S 139
A 125    A 140
D 126    P 141
I 127    V 142
L 128    V 143
V 129    A 144
N 130    E 145
I 131    I 146
D 132    S 147
Y 133    K 148
Y 134    K 149
D 135    I 150
D 136    G 151
A 137    A 152
R 138    L 153
N 139    T 154
I 140    V 155
E 141    A 156
L 142    V 157
I 143    V 158
A 144    T 159
Q 145    L 160
TER
END


