
PFRMAT AL
TARGET T0106
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.61 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1qba_3
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1qba
A   1     E   442
A   2     V   443
C   3     I   444
E   4     P   445
P   5     E   446
V   6     I   447
R   7     D   448
I   8     M   449
P   9     P   450
L  10     A   451
C  11     H   452
K  12     A   453
S  13     R   454
L  14     A   455
P  15     A   456
W  16     V   457
E  17     V   458
M  18     S   459
T  19     M   460
K  20     E   461
M  21     A   462
P  22     R   463
N  23     Y   464
H  24     K   465
L  25     K   466
H  26     L   467
H  27     H   468
S  28     A   469
T  29     A   470
Q  30     G   471
A  31     K   472
N  32     E   473
A  33     Q   474
I  34     E   475
L  35     A   476
A  36     N   477
M  37     E   478
E  38     F   479
Q  39     R   480
F  40     L   481
E  41     V   482
G  42     D   483
L  43     P   484
L  44     T   485
G  45     D   486
T  46     T   487
H  47     S   488
C  48     N   489
S  49     T   490
P  50     T   491
D  51     S   492
L  52     V   493
L  53     Q   494
F  54     F   495
F  55     F   496
L  56     N   497
C  57     R   498
A  58     Q   499
M  59     S   500
Y  60     Y   501
A  61     L   502
P  62     N   503
I  63     P   504
C  64     C   505
T  65     S   509
I  66     Q   510
D  67     R   511
F  68     F   512
Q  69     V   513
H  70     D   514
E  71     K   515
P  72     V   516
I  73     I   517
K  74     G   518
P  75     E   519
C  76     I   520
K  77     A   521
S  78     Q   522
V  79     M   523
C  80     H   524
E  81     K   525
R  82     E   526
A  83     A   527
R  84     G   528
Q  85     Q   529
G  86     E   540
C  87     A   541
E  88     K   542
P  89     N   543
I  90     I   544
L  91     R   545
I  92     L   546
K  93     G   547
Y  94     A   548
R  95     G   549
H  96     Y   550
S  97     T   551
W  98     W   572
P  99     A   573
E 100     K   574
S 101     S   575
L 102     Q   576
A 103     V   577
C 104     C   578
D 105     Q   579
E 106     T   580
L 107     M   581
P 108     I   582
V 109     K   583
Y 110     E   584
D 111     G   585
R 112     K   586
C 115     V   587
I 116     A   588
S 117     D   589
P 118     M   590
E 119     E   591
A 120     H   592
I 121     L   593
V 122     P   594
T 123     S   595
A 124     Y   596
D 125     F   597
G 126     G   598
A 127     Q   599
D 128     E   600
TER
END

