
PFRMAT AL
TARGET T0106
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1azs_C
W  16    Y 130
E  17    I 131
M  18    L 132
T  19    S 133
K  20    V 134
M  21    M 135
P  22    N 136
N  23    V 137
H  24    P 138
L  25    D 139
H  26    F 140
H  27    D 141
S  28    F 142
T  29    P 143
Q  30    P 144
A  31    E 145
N  32    F 146
A  33    Y 147
I  34    E 148
L  35    H 149
A  36    A 150
M  37    K 151
E  38    A 152
Q  39    L 153
F  40    W 154
E  41    E 155
G  42    D 156
L  43    E 157
L  44    G 158
G  45    V 159
T  46    R 160
H  47    A 161
C  48    C 162
S  49    Y 163
P  50    E 164
D  51    E 168
L  52    Y 169
L  53    Q 170
F  54    L 171
F  55    I 172
L  56    D 173
C  57    C 174
A  58    A 175
M  59    Y 177
Y  60    F 178
A  61    L 179
P  62    D 180
I  63    K 181
C  64    I 182
T  65    V 184
I  66    I 185
D  67    K 186
F  68    Q 187
Q  69    D 188
H  70    D 189
I  73    Y 190
K  74    V 191
P  75    P 192
C  76    S 193
K  77    Q 195
S  78    D 196
V  79    L 197
C  80    L 198
E  81    R 199
TER
END

