
PFRMAT AL
TARGET T0106
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1eay_C
P   5    P 159
V   6    R 160
R   7    R 161
I   8    I 162
P   9    I 163
L  10    L 164
C  11    S 165
K  12    R 166
S  13    L 167
L  14    K 168
P  15    A 169
W  16    G 170
E  17    E 171
M  18    V 172
T  19    D 173
K  20    L 174
M  21    L 175
P  22    E 176
N  23    E 177
H  24    E 178
L  25    L 179
H  26    G 180
H  27    H 181
S  28    L 182
T  29    T 183
Q  30    T 184
A  31    L 185
N  32    T 186
A  33    D 187
I  34    V 188
L  35    V 189
A  36    G 191
M  37    A 192
E  38    D 193
Q  39    S 194
F  40    L 195
E  41    S 196
G  42    A 197
L  43    I 198
L  44    L 199
G  45    P 200
T  46    G 201
H  47    D 202
C  48    I 203
S  49    A 204
P  50    E 205
D  51    D 206
L  52    D 207
L  53    I 208
F  54    T 209
F  55    A 210
L  56    V 211
C  57    L 212
A  58    C 213
M  59    F 214
Y  60    V 215
A  61    I 216
P  62    E 217
I  63    A 218
C  64    D 219
T  65    Q 220
I  66    I 221
D  67    T 222
F  68    F 223
Q  69    E 224
H  70    T 225
TER
END

