
PFRMAT AL
TARGET T0106
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1ery
L  56    E   2
C  57    C   3
A  58    A   4
M  59    N   5
Y  60    A   6
A  61    A   7
P  62    A   8
I  63    Q   9
C  64    C  10
T  65    S  11
I  66    I  12
D  67    T  13
F  68    L  14
Q  69    C  15
H  70    N  16
E  71    L  17
P  72    Y  18
I  73    C  19
K  74    G  20
P  75    P  21
C  76    L  22
K  77    I  23
S  78    E  24
V  79    I  25
C  80    C  26
E  81    E  27
R  82    T  29
A  83    V  30
R  84    M  31
Q  85    Q  32
G  86    N  33
C  87    C  34
E  88    E  35
P  89    P  36
I  90    P  37
TER
END

