
PFRMAT AL
TARGET T0107
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1fat_A
A  29    L  92
V  30    V  93
A  31    P  94
M  32    V  95
G  33    G  96
S  34    S  97
L  35    Q  98
D  36    P  99
K  37    K 100
N  38    D 101
A  39    K 102
T  40    G 103
V  45    L 108
L  46    F 109
W  47    D 110
D  48    G 111
E  49    S 112
N  50    N 113
Y  51    S 114
L  52    F 116
Y  53    H 117
V  54    T 118
L  55    V 119
A  56    A 120
I  57    V 121
V  58    E 122
K  59    F 123
D  60    D 124
P  61    T 125
V  62    L 126
L  63    Y 127
N  64    N 128
K  65    K 129
D  66    D 130
W  71    W 131
E  72    D 132
Q  73    P 133
D  74    T 134
S  75    E 135
V  76    R 136
E  77    H 137
I  78    I 138
F  79    G 139
I  80    I 140
D  81    D 141
E  82    V 142
N  83    N 143
N  84    S 144
H  85    I 145
K  86    R 146
T  87    S 147
Y  90    I 148
E  91    K 149
D  92    T 150
D  93    T 151
D  94    R 152
A  95    W 153
Q  96    D 154
F  97    F 155
V  99    V 156
N 100    N 157
Y 101    G 158
M 102    E 159
N 103    N 160
E 104    A 161
Q 105    E 162
T 106    V 163
F 107    L 164
G 108    I 165
T 109    T 166
G 110    Y 167
G 111    D 168
S 112    S 169
P 113    S 170
A 114    T 171
R 115    N 172
F 116    L 173
K 117    L 174
T 118    V 175
A 119    A 176
V 120    S 177
K 121    L 178
L 122    V 179
I 123    Y 180
E 124    K 184
G 125    T 185
G 126    S 186
Y 127    F 187
I 128    I 188
V 129    V 189
E 130    S 190
A 131    D 191
A 132    T 192
I 133    V 193
K 134    D 194
W 135    L 195
K 136    K 196
T 137    S 197
I 138    V 198
K 139    L 199
P 140    P 200
T 141    E 201
P 142    W 202
N 143    V 203
T 144    S 204
V 145    V 205
G 147    G 206
F 148    F 207
N 149    S 208
I 150    A 209
Q 151    T 210
V 152    T 211
N 153    G 212
D 154    I 213
V 162    N 221
G 163    D 222
I 164    V 223
I 165    L 224
S 166    S 225
W 167    W 226
S 168    S 227
D 169    F 228
TER
END


