
PFRMAT AL
TARGET T0108
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV. EXPERT GROUP.
REMARK GROUP LEADER: Shestopalov Boris V. TEAM: NO.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD Secondary structures predicted by DOUBLET CODE METHOD
METHOD (see SHESTOPALOV, ab initio secondary structure category)
METHOD and also relevant information from protein data bases are used.
METHOD Here the threading model for target T0107 is used.
METHOD  
MODEL  1
PARENT 1jly_A
M   1 S  11
G   2 N  12
A   3 N  13
S   4 H  14
G   5 Q  15
Q   6 K  16 
Y   7 Y  17
V   8 L  18
R   9 R  19
A  10 Y  20
R  11 Q  21
I  12 Q  26
K  13 Q  27
G  14 Y  28
A  15 G  29
Y  16 L  30
Y  17 L  31
A  18 Q  32
T  19 F  33
P  20 S  34
V  21 A  35
D  22 D  36
P  23 K  37
V  24 I  38
T  25 L  39
F  38 F  45
W  39 E  46
D  40 E  48
F  41 P  49
N  42 S  50
D  43 K  51
T  45 T  52
T  46 Y  53
Q  47 D  54
G  48 G  55
F  49 L  56
G  50 H  58
V  51 I  59
N  52 K  60
P  53 S  61
D  54 T  64
S  55 N  65
P  56 K  66
I  57 Y  67
T  58 L  68
A  59 V  69
I  60 R  70
N  61 W  71
V  62 S  72
E  63 P  73
N  64 N  74
A  65 H  75
N  66 Y  76
N  67 W  77
A  68 I  78
L  69 T  79
K  70 A  80
I  71 S  81
S  72 A  82
N  73 N  83
L  74 E  84
N  75 P  85
G  78 D  86
S  79 E  87
N  80 N  88
L  82 K  89
S  83 S  90
G  85 N  91
W  88 W  92 
A  89 A  93
N  90 C  94
V  91 F  97
R  92 K  98
I  93 P  99
S  94 L 100
A  95 Y 101
D  96 E 103
I  97 E 104
W  98 G 105
G  99 N 106
Q 100 M 107
S 101 K 108
I 102 K 109
N 103 R 111
I 104 L 112
Y 105 L 113
G 106 H 114
D 107 Q 116
T 108 L 117
K 109 G 118
L 110 H 119
T 111 Y 120
M 112 T 121
D 113 Q 122
V 114 N 123
I 115 Y 124
A 116 T 125
P 117 V 126
T 118 G 127
P 119 G 128
V 120 S 132
N 121 Y 133
V 122 L 134
S 123 F 135
I 124 A 136
A 125 E 137
A 126 S 138
I 127 S 139
P 128 D 142
Q 129 T 143
S 130 G 144
S 131 S 145
T 132 K 146
H 133 F 149
G 134 H 150
W 135 V 151
I 143 I 152
V 144 D 153
W 145 W 154
T 146 S 156
F 149 I 157
V 150 F 158
A 151 Q 159
Q 152 F 160
T 153 P 161
D 154 K 162
G 155 G 163
T 160 Y 164
L 161 V 165
T 162 T 166
I 163 F 167
S 164 K 168
T 165 G 169
N 166 N 170
D 167 N 171
S 168 G 172
P 169 K 173
F 171 Y 174
N 172 L 175
T 173 G 176
I 174 V 177
A 175 I 178
T 176 T 179
D 177 I 180
A 178 N 181
A 179 Q 182
D 180 L 183
S 181 P 184
V 182 C 185
V 183 L 186
T 184 Q 187
N 185 F 188
M 186 H 200
I 187 Q 201
L 188 M 202
F 189 F 203
V 190 V 204
G 191 T 205
S 192 S 206
N 193 N 207
S 194 G 208
D 195 T 209
I 197 I 210
S 198 C 211
L 199 I 212
D 200 K 213
N 201 S 214
I 202 Y 216
K 203 K 219
F 204 F 220
T 205 W 221
K 206 R 222
TER
END

