
PFRMAT AL
TARGET T0108
AUTHOR 5505-7671-7042
REMARK 
REMARK It seems that t0108 consists of two similar domains.
REMARK 
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1smd
Q  27    F 126
P  28    P 127
T  29    A 128
A  30    V 129
P  31    P 130
K  32    Y 131
S  36    S 132
G  37    G 133
W  39    W 134
D  40    D 135
F  41    F 136
N  42    N 137
D  43    D 138
G  44    G 139
T  45    K 140
T  46    C 141
Q  47    K 142
G  48    G 144
F  49    S 145
G  50    G 146
N  61    D 147
V  62    I 148
E  63    E 149
N  64    N 150
A  65    Y 151
N  66    N 152
N  67    D 153
A  68    A 154
L  69    T 155
K  70    Q 156
I  71    V 157
S  72    R 158
N  73    D 159
L  74    C 160
N  75    R 161
S  76    L 162
K  77    S 163
G  78    G 164
S  79    L 165
N  80    L 166
D  81    D 167
L  82    L 168
S  83    A 169
E  84    L 170
G  85    G 171
N  86    K 172
F  87    D 173
W  88    Y 174
A  89    V 175
N  90    R 176
V  91    S 177
R  92    K 178
I  93    I 179
A  95    A 180
D  96    E 181
I  97    Y 182
W  98    M 183
G  99    N 184
Q 100    H 185
S 101    L 186
I 102    I 187
N 103    D 188
I 104    I 189
TER
END


