
PFRMAT AL
TARGET T0109
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.74 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: DEATH
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1ddf
M   1     M   201
S   2     E   202
F   3     T   203
D   4     V   204
K   5     A   205
Q   6     I   206
N   7     N   207
L   8     L   208
I   9     S   209
W  10     D   210
I  11     V   211
D  12     D   212
L  13     L   213
K  22     S   214
E  23     K   215
R  24     Y   216
I  25     I   217
I  26     T   218
E  27     T   219
I  28     I   220
A  29     A   221
T  30     G   222
I  31     V   223
V  32     M   224
T  33     T   225
D  34     L   226
K  35     S   227
N  36     Q   228
L  37     V   229
N  38     K   230
I  39     G   231
L  40     F   232
A  41     V   233
E  42     R   234
G  43     K   235
P  44     N   236
V  45     G   237
L  46     V   238
A  47     N   239
V  48     E   240
H  49     A   241
Q  50     K   242
S  51     I   243
D  52     D   244
E  53     E   245
L  54     I   246
L  55     K   247
N  56     N   248
K  57     D   249
T  81     N   250
E  82     V   251
R  83     Q   252
A  84     D   253
A  85     T   254
E  86     A   255
L  87     E   256
Q  88     Q   257
T  89     K   258
L  90     V   259
D  91     Q   260
F  92     L   261
L  93     L   262
K  94     R   263
K  95     N   264
W  96     W   265
V  97     H   266
P  98     Q   267
K  99     L   268
G 100     H   269
A 101     G   270
S 102     K   271
P 103     K   272
I 104     E   273
C 105     A   274
G 106     Y   275
N 107     D   276
S 108     T   277
I 109     L   278
A 110     I   279
Q 111     K   280
D 112     D   281
K 113     L   282
R 114     K   283
F 115     K   284
L 116     A   285
V 117     N   286
K 118     L   287
K 138     C   288
E 139     T   289
L 140     L   290
A 141     A   291
A 142     E   292
R 143     K   293
W 144     I   294
K 145     Q   295
P 146     T   296
E 147     I   297
I 148     I   298
L 149     L   299
E 150     K   300
G 151     D   301
F 152     I   302
K 153     T   303
K 154     S   304
E 155     D   305
N 156     S   306
T 157     E   307
H 158     N   308
L 159     S   309
A 160     N   310
L 161     F   311
D 162     R   312
D 163     N   313
I 164     E   314
R 165     I   315
E 166     Q   316
S 167     S   317
I 168     L   318
K 169     V   319
E 170     L   320
L 171     E   321
A 172     H   322
Y 173     H   323
Y 174     H   324
R 175     H   325
E 176     H   326
H 177     H   327
TER
END

