
PFRMAT AL
TARGET T0109
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.46 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: ghf46
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1chk_A
N   7     A     1
L   8     G     2
I   9     A     3
W  10     G     4
I  11     L     5
D  12     D     6
L  18     D     7
D  19     P     8
P  20     H     9
E  21     K    10
K  22     K    11
E  23     E    12
R  24     I    13
I  25     A    14
I  26     M    15
E  27     E    16
I  28     L    17
A  29     V    18
T  30     S    19
I  31     S    20
V  32     A    21
T  33     E    22
D  34     N    23
K  35     S    24
N  36     S    25
L  37     L    26
N  38     D    27
I  39     W    28
L  40     K    29
A  41     A    30
E  42     Q    31
G  43     D    57
P  44     M    58
V  45     L    59
L  46     E    60
A  47     L    61
V  48     V    62
H  49     Q    63
Q  50     H    64
S  51     Y    65
D  52     T    66
E  53     D    67
L  54     L    68
L  55     E    69
N  56     P    70
N  59     G    71
D  60     N    72
W  61     I    73
C  62     L    74
Q  63     A    75
K  64     K    76
T  65     Y    77
H  66     L    78
S  67     P    79
E  68     A    80
N  69     L    81
G  70     K    82
L  71     K    83
I  72     V    84
E  73     N    85
A  77     G    86
S  78     S    87
K  79     A    88
L  80     S    89
T  81     H    90
E  82     S    91
R  83     G    92
A  84     L    93
A  85     G    94
L  87     T    95
Q  88     P    96
T  89     F    97
L  90     T    98
D  91     K    99
F  92     D   100
L  93     W   101
K  94     A   102
K  95     T   103
W  96     A   104
V  97     A   105
P  98     K   106
K  99     D   107
G 100     T   108
A 101     V   109
S 102     F   110
P 103     Q   111
I 104     Q   112
C 105     A   113
G 106     Q   114
N 107     N   115
S 108     D   116
I 109     E   117
A 110     R   118
Q 111     D   119
D 112     R   120
K 113     V   121
R 114     Y   122
F 115     F   123
L 116     D   124
V 117     P   125
K 118     A   126
Y 119     V   127
M 120     S   128
P 121     Q   129
D 122     A   130
L 123     K   131
A 124     A   132
D 125     D   133
Y 126     G   134
F 127     L   135
Y 129     R   136
R 130     A   137
H 131     L   138
L 132     G   139
D 133     Q   140
V 134     F   141
S 135     A   142
T 136     Y   143
L 137     Y   144
K 138     D   145
E 139     A   146
L 140     I   147
A 141     V   148
A 142     M   149
R 143     S   158
W 144     F   159
K 145     G   160
P 146     G   161
E 147     I   162
I 148     R   163
L 149     K   164
E 150     T   165
G 151     A   166
F 152     M   167
K 153     K   168
K 154     K   169
E 155     A   170
N 156     R   171
T 157     T   172
H 158     P   173
L 159     A   174
A 160     Q   175
L 161     G   176
D 162     G   177
D 163     D   178
I 164     E   179
R 165     T   180
E 166     T   181
S 167     Y   182
I 168     L   183
K 169     N   184
E 170     G   185
L 171     F   186
A 172     L   187
Y 173     D   188
Y 174     A   189
R 175     R   190
E 176     K   191
H 177     A   192
F 178     A   193
M 179     M   194
K 180     L   195
L 181     T   196
D 182     E   197
TER
END

