
PFRMAT AL
TARGET T0109
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1rcb
H   49 H 1
Q   50 K 2
S   51 C 3
D   52 D 4
E   53 E 9
L   54 I 10
L   55 I 11
N   56 K 12
K   57 T 13
M   58 L 14
N   59 N 15
D   60 S 16
W   61 L 17
C   62 T 18
Q   63 E 19
K   64 Q 20
T   65 K 21
H   66 T 22
S   67 L 23
E   68 C 24
N   69 T 25
G   70 E 26
L   71 L 27
I   72 T 30
E   73 D 31
R   74 I 32
I   75 F 33
K   76 A 34
A   77 A 35
S   78 S 36
K   79 K 37
L   80 T 39
T   81 T 40
E   82 E 41
R   83 K 42
A   84 E 43
A   85 T 44
E   86 F 45
L   87 A 49
Q   88 T 50
T   89 V 51
L   90 L 52
D   91 Q 54
F   92 F 55
L   93 Y 56
K   94 S 57
K   95 H 58
W   96 H 59
V   97 E 60
P   98 K 61
K   99 D 62
G  100 T 63
A  101 R 64
S  102 C 65
I  104 L 66
C  105 G 67
G  106 A 68
N  107 T 69
S  108 A 70
I  109 Q 71
A  110 Q 72
Q  111 F 73
D  112 H 74
K  113 R 75
R  114 K 77
F  115 Q 78
L  116 L 79
V  117 I 80
K  118 R 81
Y  119 F 82
M  120 L 83
P  121 K 84
D  122 R 85
L  123 L 86
A  124 D 87
R  130 R 88
H  131 N 89
L  137 L 90
K  138 W 91
E  139 G 92
L  140 L 93
A  141 A 94
E  147 G 95
I  148 L 96
L  149 N 97
E  150 S 98
G  151 C 99
F  152 P 100
K  153 V 101
K  154 K 102
E  155 E 103
N  156 A 104
T  157 N 105
H  158 Q 106
L  159 S 107
A  160 T 108
L  161 L 109
D  162 E 110
D  163 N 111
I  164 F 112
R  165 L 113
E  166 E 114
S  167 R 115
I  168 L 116
K  169 K 117
E  170 T 118
L  171 I 119
A  172 M 120
R  175 R 121
E  176 E 122
H  177 K 123
F  178 Y 124
M  179 S 125
K  180 K 126
L  181 C 127
D  182 S 129
TER
END

