
PFRMAT AL
TARGET T0109
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1gse_A
A   41 L 81
E   42 Y 82
G   43 G 83
P   44 K 84
V   45 D 85
V   48 I 86
H   49 K 87
S   51 E 88
D   52 R 89
E   53 A 90
L   54 L 91
L   55 I 92
N   56 D 93
K   57 M 94
M   58 Y 95
N   59 I 96
D   60 E 97
W   61 G 98
C   62 I 99
Q   63 A 100
K   64 D 101
T   65 L 102
N   69 G 103
G   70 E 104
L   71 M 105
I   72 I 106
E   73 L 107
R   74 L 108
I   75 L 109
K   76 P 110
A   77 V 111
S   78 C 112
K   79 P 113
L   80 P 114
T   81 E 115
E   82 E 116
R   83 K 117
A   84 D 118
A   85 A 119
E   86 K 120
L   87 L 121
Q   88 A 122
T   89 L 123
L   90 I 124
D   91 E 126
F   92 K 127
L   93 I 128
K   94 K 129
K   95 N 130
W   96 Y 132
V   97 F 133
P   98 P 134
K   99 H 143
G  100 G 144
A  101 Q 145
S  102 D 146
P  103 Y 147
I  104 L 148
C  105 V 149
G  106 G 150
N  107 N 151
S  108 D 157
I  109 I 158
A  110 H 159
Q  111 V 161
D  112 E 162
K  113 L 163
R  114 L 164
F  115 Y 165
L  116 Y 166
V  117 V 167
K  118 E 168
Y  119 E 169
M  120 L 170
P  121 P 179
D  122 L 180
L  123 L 181
A  124 K 182
D  125 A 183
F  127 L 184
H  128 K 185
Y  129 T 186
R  130 R 187
H  131 I 188
L  132 S 189
D  133 N 190
V  134 L 191
S  135 P 192
T  136 T 193
L  137 V 194
K  138 K 195
E  139 K 196
L  140 F 197
A  141 L 198
K  145 Q 199
P  146 P 200
E  147 G 201
I  148 S 202
L  149 P 203
E  150 R 204
G  151 K 205
F  152 P 206
K  153 P 207
K  154 M 208
E  155 D 209
L  161 E 210
D  162 K 211
D  163 S 212
I  164 L 213
R  165 E 214
E  166 E 215
S  167 A 216
I  168 R 217
K  169 K 218
E  170 I 219
L  171 F 220
A  172 R 221
Y  173 F 222
TER
END

