
PFRMAT AL
TARGET T0109
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1pmt
I  11    I  16
D  12    V  17
L  13    L  18
E  14    R  19
M  15    E  20
T  16    T  21
G  17    G  22
L  18    L  23
D  19    D  24
P  20    F  25
E  21    S  26
K  22    I  27
E  23    E  28
R  24    R  29
I  25    I  30
E  27    D  31
I  28    L  32
A  29    R  33
T  30    T  34
I  31    K  35
V  32    K  36
T  33    T  37
D  34    E  38
K  35    S  39
N  36    G  40
L  37    K  41
N  38    D  42
I  39    F  43
L  40    L  44
A  41    A  45
E  42    Q  51
G  43    V  52
P  44    P  53
V  45    V  54
L  46    L  55
A  47    Q  56
V  48    L  57
H  49    D  58
Q  50    N  59
S  51    G  60
D  52    D  61
E  53    I  62
L  54    L  63
L  55    T  64
N  56    E  65
K  57    G  66
M  58    V  67
N  59    A  68
D  60    Q  71
W  61    Y  72
C  62    L  73
Q  63    A  74
K  64    D  75
T  65    L  76
H  66    K  77
S  67    P  78
E  68    D  79
N  69    R  80
G  70    N  81
L  71    L  82
I  72    I  83
E  73    A  84
R  74    P  85
I  75    P  86
K  76    K  87
A  77    A  88
T  81    L  89
E  82    E  90
R  83    R  91
A  84    Y  92
A  85    H  93
E  86    Q  94
L  87    I  95
Q  88    E  96
T  89    W  97
L  90    L  98
D  91    N  99
F  92    F 100
L  93    L 101
K  94    A 102
K  95    S 103
W  96    E 104
V  97    V 105
P  98    H 106
K  99    K 107
G 100    G 108
A 101    Y 109
S 102    S 110
P 103    P 111
I 104    L 112
C 105    F 113
G 106    S 114
N 107    S 115
S 108    D 116
I 109    T 117
A 110    P 118
Q 111    E 119
D 112    S 120
K 113    Y 121
R 114    L 122
F 115    P 123
L 116    V 124
V 117    V 125
K 118    K 126
TER
END


