
PFRMAT AL
TARGET T0109
AUTHOR 7023-8870-2129
METHOD Additional Information
METHOD oligoribonuclease
METHOD 
METHOD SENSER identified a relationship between the target and the
METHOD KLENOW FRAGMENT family in recursive searching. An alignment
METHOD was generated using MACAW and secondary structure information.
METHOD The initial alignment was made based on sequence similarity between
METHOD the target family and the template family. Regions that could
METHOD not be aligned through sequence similarity were aligned through
METHOD conserved hydrophobicity patterns between predicted (for target 
METHOD sequence) and actual (for template) secondary structure elements.
MODEL 1
PARENT 1qslA
Q   6    A 349
N   7    P 350
L   8    V 351
I   9    F 352
W  10    A 353
I  11    F 354
D  12    D 355
L  13    T 356
E  14    E 357
M  15    T 358
T  16    D 359
G  17    S 360
L  18    L 361
D  19    D 362
P  20    N 363
E  21    I 364
K  22    S 365
E  23    A 366
R  24    N 367
I  25    L 368
I  26    V 369
E  27    G 370
I  28    L 371
A  29    S 372
T  30    F 373
I  31    A 374
V  32    I 375
T  33    E 376
D  34    P 377
K  35    G 378
N  36    V 379
L  37    A 380
N  38    A 381
I  39    Y 382
L  40    I 383
A  41    P 384
E  42    V 385
E  86    R 398
L  87    E 399
Q  88    R 400
T  89    A 401
L  90    L 402
D  91    E 403
F  92    L 404
L  93    L 405
K  94    K 406
K  95    P 407
W  96    L 408
V  97    L 409
P  98    E 410
K  99    D 411
G 100    E 412
A 101    K 413
S 102    A 414
P 103    L 415
I 104    K 416
C 105    V 417
G 106    G 418
N 107    Q 419
S 108    N 420
I 109    L 421
A 110    K 422
Q 111    Y 423
D 112    D 424
K 113    R 425
R 114    G 426
F 115    I 427
L 116    L 428
V 117    A 429
Y 129    F 440
R 130    D 441
H 131    T 442
L 132    M 443
D 133    L 444
V 134    E 445
S 135    S 446
T 136    Y 447
L 137    I 448
K 138    L 449
E 139    N 450
L 140    S 451
T 157    M 458
H 158    A 498
L 159    A 499
A 160    E 500
L 161    D 501
D 162    A 502
D 163    D 503
I 164    V 504
R 165    T 505
E 166    L 506
S 167    Q 507
I 168    L 508
K 169    H 509
E 170    L 510
L 171    K 511
A 172    M 512
Y 173    W 513
Y 174    P 514
R 175    D 515
E 176    L 516
H 177    Q 517
F 178    K 518
M 179    H 519
K 180    K 520
L 181    G 521
D 182    P 522
TER
END

