
PFRMAT AL
TARGET T0112
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1cdo_A
M    1 A 1
A    2 T 2
S    3 V 3
D    4 G 4
N    5 K 5
L    6 V 6
S    7 A 11
A    8 A 12
V    9 V 13
L   10 A 14
Y   11 W 15
K   12 E 16
Q   13 A 17
N   14 N 18
D   15 K 19
L   16 L 21
R   17 V 22
L   18 I 23
E   19 E 24
Q   20 E 25
R   21 I 26
P   22 E 27
I   23 V 28
P   24 D 29
E   25 V 30
P   26 P 31
K   27 H 32
E   28 A 33
D   29 N 34
E   30 E 35
V   31 I 36
L   32 R 37
L   33 I 38
Q   34 K 39
M   35 I 40
A   36 I 41
Y   37 A 42
V   38 T 43
G   39 G 44
I   40 V 45
C   41 C 46
G   42 H 47
S   43 T 48
D   44 D 49
V   45 L 50
H   46 Y 51
Y   47 H 52
Y   48 L 53
E   49 F 54
H   50 E 55
G   51 G 56
R   52 K 57
I   53 H 58
A   54 K 59
D   55 D 60
K   59 G 61
D   60 F 62
P   61 P 63
M   62 V 64
V   63 V 65
I   64 L 66
G   65 G 67
H   66 H 68
E   67 E 69
A   68 G 70
S   69 A 71
G   70 G 72
T   71 I 73
V   72 V 74
V   73 E 75
K   74 S 76
V   75 V 77
G   76 G 78
K   77 P 79
N   78 G 80
V   79 V 81
K   80 T 82
H   81 E 83
L   82 F 84
K   83 Q 85
K   84 P 86
G   85 G 87
D   86 E 88
R   87 K 89
V   88 V 90
A   89 I 91
V   90 P 92
E   91 L 93
P   92 F 94
G   93 I 95
V   94 S 96
P   95 Q 97
C   96 C 98
R   97 G 99
R   98 E 100
C   99 C 101
Q  100 R 102
F  101 F 103
C  102 C 104
K  103 Q 105
E  104 S 106
G  105 P 107
K  106 K 108
Y  107 T 109
N  108 N 110
L  109 Q 111
C  110 C 112
P  111 P 126
D  112 K 127
L  113 E 128
T  114 T 129
F  115 R 130
C  116 F 131
A  117 T 132
T  118 C 133
P  119 K 134
P  120 G 135
D  121 R 136
D  122 K 137
G  123 S 145
N  124 T 146
L  125 F 147
A  126 S 148
R  127 Q 149
Y  128 Y 150
Y  129 T 151
V  130 V 152
H  131 V 153
A  132 N 154
A  133 Q 155
D  134 I 156
F  135 A 157
C  136 V 158
H  137 A 159
K  138 K 160
L  139 I 161
P  140 D 162
D  141 P 163
N  142 S 164
V  143 A 165
S  144 P 166
L  145 L 167
E  146 D 168
E  147 T 169
G  148 V 170
A  149 C 171
L  150 L 172
L  151 L 173
E  152 G 174
P  153 C 175
L  154 V 177
S  155 S 178
V  156 T 179
G  157 G 180
V  158 F 181
H  159 G 182
A  160 A 183
C  161 A 184
R  162 N 186
R  163 T 187
A  164 A 188
G  165 K 189
V  166 V 190
Q  167 E 191
L  168 P 192
G  169 G 193
T  170 S 194
T  171 T 195
V  172 C 196
L  173 A 197
V  174 V 198
I  175 F 199
G  176 G 200
A  177 L 201
G  178 G 202
P  179 A 203
I  180 V 204
G  181 G 205
L  182 L 206
V  183 A 207
S  184 A 208
V  185 V 209
L  186 M 210
A  187 G 211
A  188 C 212
K  189 H 213
A  190 S 214
Y  191 A 215
G  192 G 216
A  193 A 217
F  194 R 219
V  195 I 220
V  196 I 221
C  197 A 222
T  198 V 223
A  199 D 224
R  200 L 225
S  201 N 226
P  202 P 227
R  203 D 228
R  204 K 229
L  205 F 230
E  206 E 231
V  207 K 232
A  208 A 233
K  209 K 234
N  210 V 235
C  211 F 236
G  212 G 237
A  213 A 238
T  216 T 239
L  217 D 240
V  218 F 241
V  219 V 242
D  220 N 243
P  221 P 244
K  223 N 245
E  224 D 246
E  225 H 247
E  226 S 248
S  227 E 249
S  228 P 250
I  229 I 251
I  230 S 252
E  231 Q 253
R  232 V 254
I  233 L 255
R  234 S 256
S  235 K 257
A  236 M 258
I  237 T 259
G  238 N 260
D  239 G 261
L  240 G 262
P  241 V 263
N  242 D 264
V  243 F 265
T  244 S 266
I  245 L 267
D  246 E 268
C  247 C 269
S  248 V 270
G  249 G 271
N  250 N 272
E  251 V 273
K  252 G 274
C  253 V 275
I  254 M 276
T  255 R 277
I  256 N 278
G  257 A 279
I  258 L 280
N  259 E 281
I  260 S 282
T  261 C 283
R  262 L 284
T  263 K 285
G  264 G 286
G  265 G 288
T  266 V 289
L  267 S 290
M  268 V 291
L  269 L 292
V  270 V 293
G  271 G 294
M  272 W 295
G  273 L 298
S  274 H 299
Q  275 D 300
M  276 V 301
V  277 A 302
T  278 T 303
V  279 R 304
P  280 P 305
L  281 L 308
V  282 I 309
N  283 A 310
A  284 G 311
C  285 R 312
A  286 T 313
R  287 W 314
E  288 K 315
I  289 G 316
D  290 S 317
I  291 M 318
K  292 F 319
S  293 G 320
V  294 G 321
F  295 F 322
R  296 K 323
Y  297 G 324
C  298 K 325
N  299 D 326
D  300 G 327
Y  301 V 328
P  302 P 329
I  303 K 330
A  304 M 331
L  305 V 332
E  306 K 333
M  307 A 334
V  308 Y 335
A  309 L 336
S  310 D 337
G  311 K 338
R  312 K 339
C  313 V 340
N  314 K 341
V  315 L 342
K  316 D 343
Q  317 E 344
L  318 F 345
V  319 I 346
T  320 T 347
H  321 H 348
S  322 R 349
F  323 M 350
K  324 P 351
L  325 L 352
E  326 E 353
Q  327 S 354
T  328 V 355
V  329 N 356
D  330 D 357
A  331 A 358
F  332 I 359
E  333 D 360
A  334 L 361
A  335 M 362
R  336 K 363
K  337 H 364
K  338 G 365
A  339 K 366
T  342 C 367
I  343 I 368
K  344 R 369
V  345 T 370
M  346 V 371
I  347 L 372
S  348 S 373
C  349 L 374
TER
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