
PFRMAT AL
TARGET T0112
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1sdg
M    1 A 4
A    2 K 5
S    3 P 6
D    4 E 9
N    5 N 10
L    6 L 11
S    7 S 12
A    8 L 13
V    9 V 14
L   10 V 15
Y   11 H 16
K   12 G 17
Q   13 P 18
N   14 G 19
D   15 D 20
L   16 L 21
R   17 R 22
L   18 L 23
E   19 E 24
Q   20 N 25
R   21 Y 26
P   22 P 27
I   23 I 28
P   24 P 29
E   25 E 30
P   26 P 31
K   27 G 32
E   28 P 33
D   29 N 34
E   30 E 35
V   31 V 36
L   32 L 37
L   33 L 38
Q   34 K 39
M   35 M 40
A   36 H 41
Y   37 S 42
V   38 V 43
G   39 G 44
I   40 I 45
C   41 C 46
G   42 G 47
S   43 S 48
D   44 D 49
V   45 V 50
H   46 H 51
Y   47 Y 52
Y   48 W 53
E   49 Q 54
G   51 G 55
R   52 R 56
I   53 I 57
A   54 G 57B
D   55 D 57C
F   56 F 57D
I   57 V 58
V   58 V 59
K   59 K 60
D   60 K 61
P   61 P 62
M   62 M 63
V   63 V 64
I   64 L 65
G   65 G 66
H   66 H 67
E   67 E 68
A   68 A 69
S   69 S 70
G   70 G 71
T   71 T 72
V   72 V 73
V   73 V 74
K   74 K 75
V   75 V 76
G   76 G 77
K   77 S 78
N   78 L 79
V   79 V 80
K   80 R 81
H   81 H 82
L   82 L 83
K   83 Q 84
K   84 P 85
G   85 G 86
D   86 D 87
R   87 R 88
V   88 V 89
A   89 A 90
V   90 I 91
E   91 Q 92
P   92 P 93
G   93 G 94
V   94 A 95
P   95 P 96
C   96 R 97
R   97 Q 98
R   98 T 99
C   99 D 100
Q  100 E 101
F  101 F 102
C  102 C 103
K  103 K 104
E  104 I 105
G  105 G 106
K  106 R 107
Y  107 Y 108
N  108 N 109
L  109 L 110
C  110 S 111
P  111 P 112
D  112 T 113
L  113 I 114
T  114 F 115
F  115 F 116
C  116 C 117
A  117 A 118
T  118 T 139
P  119 P 140
P  120 P 141
D  121 D 142
D  122 D 143
G  123 G 144
N  124 N 145
L  125 L 146
A  126 C 147
R  127 R 148
Y  128 F 149
Y  129 Y 150
V  130 K 151
H  131 H 152
A  132 N 153
A  133 A 154
D  134 N 155
F  135 F 156
C  136 C 157
H  137 Y 158
K  138 K 159
L  139 L 160
P  140 P 161
D  141 D 162
N  142 N 163
V  143 V 164
S  144 T 165
L  145 F 166
E  146 E 167
E  147 E 168
G  148 G 169
A  149 A 170
L  150 L 171
L  151 I 172
E  152 E 174
P  153 P 175
L  154 L 176
S  155 S 177
V  156 V 178
G  157 G 179
V  158 I 180
H  159 H 182
A  160 A 183
C  161 C 184
R  162 R 185
R  163 R 186
A  164 A 187
G  165 G 188
V  166 V 189
Q  167 T 190
L  168 L 191
G  169 G 192
T  170 N 193
T  171 K 194
V  172 V 195
L  173 L 196
V  174 V 197
I  175 C 198
G  176 G 199
A  177 A 200
G  178 G 201
P  179 P 202
I  180 I 203
G  181 G 204
L  182 L 205
V  183 V 206
S  184 N 207
V  185 L 208
L  186 L 209
A  187 A 210
A  188 A 211
K  189 K 212
A  190 A 213
Y  191 M 214
G  192 G 215
A  193 A 216
F  194 Q 218
V  195 V 219
V  196 V 220
C  197 V 221
T  198 T 222
A  199 D 223
R  200 L 224
S  201 S 225
P  202 A 226
R  203 S 227
R  204 R 228
L  205 L 229
E  206 S 230
V  207 K 231
A  208 A 232
K  209 K 233
N  210 E 234
C  211 V 235
G  212 G 236
A  213 A 237
D  214 D 238
V  215 F 239
T  216 I 240
L  217 L 241
V  218 E 242
V  219 I 243
A  222 S 244
K  223 N 245
E  224 E 246
E  225 S 247
E  226 P 248
S  227 E 249
S  228 E 250
I  229 I 251
I  230 A 252
E  231 K 253
R  232 K 254
I  233 V 255
R  234 E 256
S  235 G 257
A  236 L 258
I  237 L 259
G  238 G 260
D  239 S 261
L  240 K 262
P  241 P 263
N  242 E 264
V  243 V 265
T  244 T 266
I  245 I 267
D  246 E 268
C  247 C 269
S  248 T 270
G  249 G 271
N  250 V 272
E  251 E 273
K  252 T 274
C  253 S 275
I  254 I 276
T  255 Q 277
I  256 A 278
G  257 G 279
I  258 I 280
N  259 Y 281
I  260 A 282
T  261 T 283
R  262 H 284
T  263 S 285
G  264 G 286
G  265 G 287
T  266 T 288
L  267 L 289
M  268 V 290
L  269 L 291
V  270 V 292
G  271 G 293
M  272 L 294
G  273 G 295
S  274 S 296
Q  275 E 297
M  276 M 298
V  277 T 299
T  278 S 302
V  279 V 304
P  280 P 305
L  281 L 307
V  282 V 308
N  283 H 309
A  284 A 310
C  285 A 311
A  286 T 313
R  287 R 314
E  288 E 315
I  289 V 316
D  290 D 317
I  291 I 318
K  292 K 319
S  293 G 320
V  294 V 321
F  295 F 322
R  296 R 323
Y  297 Y 324
C  298 C 325
N  299 N 326
D  300 T 327
Y  301 W 328
P  302 P 329
I  303 M 330
A  304 A 331
L  305 I 332
E  306 S 333
M  307 M 334
V  308 L 335
A  309 A 336
S  310 S 337
G  311 K 338
R  312 S 339
C  313 V 340
N  314 N 341
V  315 V 342
K  316 K 343
Q  317 P 344
L  318 L 345
V  319 V 346
T  320 T 347
H  321 H 348
S  322 R 349
F  323 F 350
K  324 P 351
L  325 L 352
E  326 E 353
Q  327 K 354
T  328 A 355
V  329 L 356
D  330 E 357
A  331 A 358
F  332 F 359
E  333 E 360
A  334 T 361
A  335 S 362
R  336 K 363
K  337 K 364
K  338 G 365
A  339 L 366
D  340 G 367
I  343 L 368
K  344 K 369
V  345 V 370
M  346 M 371
I  347 I 372
S  348 K 373
C  349 C 374
TER
END

