
PFRMAT SS
TARGET T0112
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0112.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 456.756
METHOD
MODEL 1
M C 0.472
A H 0.626
S H 0.702
D H 0.737
N H 0.690
L H 0.581
S H 0.581
A H 0.499
V E 0.555
L E 0.474
Y C 0.744
K C 0.952
Q C 0.944
N C 0.891
D C 0.589
L E 0.818
R E 0.933
L E 0.947
E E 0.915
Q E 0.803
R E 0.576
P C 0.587
I C 0.756
P C 0.774
E C 0.784
P C 0.839
K C 0.946
E C 0.962
D C 0.948
E C 0.548
V E 0.903
L E 0.982
L E 0.993
Q E 0.995
M E 0.996
A E 0.992
Y E 0.970
V E 0.878
G E 0.729
I C 0.520
C C 0.828
G C 0.562
S H 0.484
D H 0.559
V H 0.446
H H 0.447
Y E 0.497
Y E 0.493
E E 0.494
H C 0.641
G C 0.928
R C 0.819
I C 0.795
A C 0.868
D C 0.877
F C 0.867
I C 0.868
V C 0.851
K C 0.861
D C 0.901
P C 0.871
M C 0.697
V C 0.573
I C 0.671
G C 0.795
H C 0.645
E C 0.479
A E 0.419
S E 0.632
G E 0.791
T E 0.849
V E 0.916
V E 0.903
K E 0.851
V E 0.641
G C 0.789
K C 0.912
N C 0.919
V C 0.818
K C 0.691
H C 0.488
L E 0.536
K C 0.575
K C 0.698
G C 0.775
D E 0.565
R E 0.805
V E 0.921
A E 0.915
V E 0.770
E E 0.541
P C 0.577
G C 0.690
V C 0.782
P C 0.800
C C 0.836
R C 0.845
R C 0.809
C C 0.934
Q C 0.748
F C 0.667
C C 0.504
K C 0.501
E C 0.564
G C 0.779
K C 0.699
Y C 0.640
N C 0.645
L C 0.636
C C 0.815
P C 0.904
D C 0.923
L C 0.822
T C 0.630
F E 0.508
C E 0.500
A C 0.618
T C 0.715
P C 0.740
P C 0.826
D C 0.867
D C 0.820
G C 0.698
N C 0.523
L E 0.591
A E 0.708
R E 0.782
Y E 0.854
Y E 0.866
V E 0.851
H E 0.730
A C 0.709
A C 0.602
D C 0.620
F C 0.498
C E 0.540
H E 0.718
K E 0.648
L C 0.655
P C 0.932
D C 0.939
N C 0.945
V C 0.944
S C 0.956
L H 0.853
E H 0.853
E H 0.892
G H 0.764
A H 0.716
L H 0.548
L C 0.620
E C 0.802
P H 0.609
L H 0.706
S H 0.781
V H 0.848
G H 0.923
V H 0.949
H H 0.966
A H 0.951
C H 0.942
R H 0.938
R H 0.887
A H 0.588
G C 0.957
V C 0.869
Q C 0.917
L C 0.952
G C 0.959
T C 0.675
T E 0.746
V E 0.957
L E 0.990
V E 0.983
I E 0.890
G E 0.503
A C 0.873
G C 0.875
P H 0.900
I H 0.967
G H 0.993
L H 0.996
V H 0.998
S H 0.999
V H 0.999
L H 0.998
A H 0.996
A H 0.995
K H 0.991
A H 0.973
Y H 0.924
G C 0.978
A C 0.971
F C 0.526
V E 0.929
V E 0.985
C E 0.967
T E 0.822
A C 0.577
R C 0.919
S C 0.977
P H 0.935
R H 0.965
R H 0.981
L H 0.983
E H 0.982
V H 0.980
A H 0.979
K H 0.971
N H 0.960
C H 0.895
G C 0.980
A C 0.984
D C 0.920
V C 0.664
T C 0.453
L C 0.378
V E 0.530
V E 0.507
D C 0.743
P C 0.819
A C 0.871
K C 0.864
E C 0.872
E C 0.858
E C 0.733
S C 0.694
S H 0.614
I H 0.985
I H 0.993
E H 0.997
R H 0.997
I H 0.995
R H 0.991
S H 0.982
A H 0.972
I H 0.890
G H 0.666
D C 0.634
L C 0.951
P C 0.880
N C 0.777
V E 0.963
T E 0.989
I E 0.964
D E 0.807
C C 0.602
S C 0.772
G C 0.848
N C 0.503
E H 0.792
K H 0.875
C H 0.906
I H 0.958
T H 0.973
I H 0.980
G H 0.980
I H 0.976
N H 0.970
I H 0.938
T H 0.864
R C 0.742
T C 0.837
G C 0.980
G C 0.774
T E 0.787
L E 0.972
M E 0.989
L E 0.975
V E 0.924
G E 0.698
M C 0.590
G C 0.835
S C 0.921
Q C 0.913
M C 0.860
V C 0.841
T C 0.814
V C 0.769
P C 0.811
L H 0.743
V H 0.786
N H 0.827
A H 0.692
C H 0.598
A H 0.445
R C 0.582
E C 0.584
I E 0.564
D E 0.737
I E 0.857
K E 0.829
S E 0.737
V E 0.582
F C 0.590
R C 0.795
Y C 0.840
C C 0.656
N C 0.560
D H 0.548
Y H 0.974
P H 0.987
I H 0.992
A H 0.991
L H 0.990
E H 0.986
M H 0.981
V H 0.960
A H 0.933
S H 0.859
G C 0.972
R C 0.920
C C 0.711
N C 0.790
V C 0.647
K C 0.733
Q C 0.670
L C 0.719
V C 0.606
T C 0.527
H E 0.535
S E 0.610
F C 0.492
K C 0.803
L H 0.873
E H 0.911
Q H 0.951
T H 0.977
V H 0.991
D H 0.995
A H 0.997
F H 0.997
E H 0.995
A H 0.991
A H 0.981
R H 0.951
K H 0.866
K C 0.829
A C 0.907
D C 0.903
N C 0.844
T C 0.637
I E 0.741
K E 0.927
V E 0.982
M E 0.993
I E 0.975
S E 0.860
C C 0.556
R C 0.837
Q C 0.895
G C 0.960
END

