
PFRMAT AL
TARGET T0113
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=26.97
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: sdr
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1hdc_A
V   5     N     2
R   6     D     3
S   7     L     4
V   8     S     5
K   9     G     6
L  11     K     7
V  12     T     8
A  13     V     9
V  14     I    10
I  15     I    11
T  16     T    12
G  17     G    13
G  18     G    14
A  19     A    15
S  20     R    16
G  21     G    17
L  22     L    18
G  23     G    19
L  24     A    20
S  25     E    21
T  26     A    22
A  27     A    23
K  28     R    24
R  29     Q    25
L  30     A    26
V  31     V    27
G  32     A    28
G  34     G    30
A  35     A    31
T  36     R    32
A  37     V    33
V  38     V    34
L  39     L    35
L  40     A    36
P  43     L    39
N  44     D    40
S  45     E    41
E  46     E    42
G  47     G    43
E  48     A    44
T  49     A    45
E  50     T    46
A  51     A    47
K  52     R    48
K  53     E    49
L  54     L    50
E  68     E    64
K  69     E    65
E  70     D    66
V  71     W    67
Q  72     Q    68
A  73     R    69
A  74     V    70
L  75     V    71
T  76     A    72
L  77     Y    73
A  78     A    74
K  79     R    75
E  80     E    76
K  81     E    77
F  82     F    78
G  83     G    79
R  84     S    80
I  85     V    81
D  86     D    82
V  87     G    83
A  88     L    84
V  89     V    85
N  90     N    86
C  91     N    87
A  92     A    88
G  93     G    89
V  96     G    93
K  99     M    94
T 100     F    95
Y 101     L    96
H 102     E    97
E 103     T    98
K 105     E    99
N 106     S   100
L 111     V   101
E 112     E   102
D 113     R   103
F 114     F   104
Q 115     R   105
R 116     K   106
V 117     V   107
I 118     V   108
N 119     E   109
V 120     I   110
N 121     N   111
L 122     L   112
I 123     T   113
G 124     G   114
T 125     V   115
F 126     F   116
N 127     I   117
V 128     G   118
I 129     M   119
R 130     K   120
L 131     T   121
V 132     V   122
A 133     I   123
G 134     P   124
V 135     A   125
M 136     M   126
G 137     K   127
Q 138     D   128
N 139     A   129
G 145     G   130
R 147     G   131
G 148     G   132
V 149     S   133
I 150     I   134
I 151     V   135
N 152     N   136
T 153     I   137
A 154     S   138
S 155     S   139
V 156     A   140
A 157     A   141
A 158     G   142
F 159     L   143
E 160     M   144
Q 162     G   145
V 163     L   146
G 164     A   147
Q 165     L   148
A 166     T   149
A 167     S   151
Y 168     Y   152
S 169     G   153
A 170     A   154
S 171     S   155
K 172     K   156
G 173     W   157
G 174     G   158
I 175     V   159
V 176     R   160
G 177     G   161
M 178     L   162
T 179     S   163
L 180     K   164
P 181     L   165
I 182     A   166
A 183     A   167
R 184     V   168
L 186     E   169
A 187     L   170
P 188     G   171
I 189     D   173
G 190     R   174
I 191     I   175
R 192     R   176
V 193     V   177
V 194     N   178
T 195     S   179
I 196     V   180
A 197     H   181
P 198     P   182
G 199     G   183
L 200     M   184
F 201     T   185
A 202     Y   186
T 203     T   187
P 204     P   188
L 205     M   189
L 206     T   190
T 207     A   191
T 208     E   192
L 209     T   193
V 213     Q   197
R 214     G   198
N 215     E   199
F 216     G   200
L 217     N   201
A 218     Y   202
S 219     P   203
V 221     N   204
P 222     T   205
F 223     P   206
P 224     M   207
L 227     G   211
D 229     E   213
P 230     P   214
A 231     G   215
E 232     E   216
Y 233     I   217
A 234     A   218
H 235     G   219
L 236     A   220
V 237     V   221
Q 238     V   222
M 239     K   223
V 240     L   224
I 241     L   225
E 242     S   226
N 243     S   229
P 244     S   230
F 245     Y   231
L 246     V   232
N 247     T   233
G 248     G   234
E 249     A   235
V 250     E   236
I 251     L   237
R 252     A   238
L 253     V   239
D 254     D   240
G 255     G   241
A 256     G   242
I 257     W   243
R 258     T   244
M 259     T   245
Q 260     G   246
P 261     P   247
TER
END

