
PFRMAT AL
TARGET T0113
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=21.35
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1a4ua
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1a4u_A
R   6     M     1
S   7     D     2
V   8     L     3
K   9     T     4
G  10     N     5
L  11     K     6
V  12     N     7
A  13     V     8
V  14     I     9
I  15     F    10
T  16     V    11
G  17     A    12
G  18     A    13
A  19     L    14
S  20     G    15
G  21     G    16
L  22     I    17
G  23     G    18
L  24     L    19
S  25     D    20
T  26     T    21
A  27     S    22
K  28     R    23
R  29     E    24
L  30     L    25
V  31     V    26
G  32     K    27
Q  33     R    28
G  34     N    29
A  35     L    30
T  36     K    31
A  37     V    34
V  38     I    35
L  39     L    36
L  40     D    37
D  41     R    38
V  42     V    39
P  43     E    40
N  44     N    41
S  45     P    42
E  46     T    43
G  47     A    44
E  48     L    45
T  49     A    46
E  50     E    47
A  51     L    48
K  52     K    49
K  53     A    50
L  54     I    51
G  55     N    52
G  56     P    53
N  57     N    56
C  58     I    57
I  59     T    58
F  60     F    59
A  61     H    60
P  62     T    61
A  63     Y    62
N  64     D    63
V  65     V    64
T  66     T    65
S  67     P    67
E  68     V    68
K  69     A    69
E  70     E    70
V  71     S    71
Q  72     K    72
A  73     K    73
A  74     L    74
L  75     L    75
T  76     K    76
L  77     K    77
A  78     I    78
K  79     F    79
E  80     D    80
K  81     Q    81
F  82     L    82
G  83     K    83
R  84     T    84
I  85     V    85
D  86     D    86
V  87     I    87
A  88     L    88
V  89     I    89
N  90     N    90
C  91     G    91
A  92     A    92
G  93     G    93
I  94     I    94
H 109     L    95
T 110     D    96
L 111     D    97
E 112     H    98
D 113     Q    99
F 114     I   100
Q 115     E   101
R 116     R   102
V 117     T   103
I 118     I   104
N 119     A   105
V 120     I   106
N 121     N   107
L 122     F   108
I 123     T   109
G 124     G   110
T 125     L   111
F 126     V   112
N 127     N   113
V 128     T   114
I 129     T   115
R 130     T   116
L 131     A   117
V 132     I   118
A 133     L   119
G 134     D   120
V 135     F   121
M 136     W   122
G 137     D   123
Q 138     K   124
N 139     R   125
E 140     K   126
G 144     G   127
G 145     G   128
Q 146     P   129
R 147     G   130
G 148     G   131
V 149     I   132
I 150     I   133
I 151     A   134
N 152     N   135
T 153     I   136
A 154     C   137
S 155     S   138
V 156     V   139
A 157     T   140
A 158     G   141
F 159     F   142
E 160     N   143
G 161     A   144
Q 162     I   145
V 163     H   146
G 164     Q   147
Q 165     V   148
A 166     P   149
A 167     V   150
Y 168     Y   151
S 169     S   152
A 170     A   153
S 171     S   154
K 172     K   155
G 173     A   156
G 174     A   157
I 175     V   158
V 176     V   159
G 177     S   160
M 178     F   161
T 179     T   162
L 180     N   163
P 181     S   164
I 182     L   165
A 183     A   166
R 184     K   167
D 185     L   168
L 186     A   169
A 187     P   170
P 188     I   171
I 189     T   172
G 190     G   173
I 191     V   174
R 192     T   175
V 193     A   176
V 194     Y   177
T 195     S   178
I 196     I   179
A 197     N   180
P 198     P   181
G 199     G   182
L 200     I   183
F 201     T   184
A 202     R   185
T 203     T   186
P 204     P   187
L 205     L   188
L 206     V   189
T 207     H   190
T 208     T   191
L 209     F   192
P 210     N   193
D 211     S   194
K 212     W   195
V 213     L   196
R 214     D   197
N 215     V   198
F 216     E   199
L 217     P   200
A 218     R   201
S 219     V   202
Q 220     A   203
V 221     E   204
P 222     L   205
F 223     L   206
P 224     L   207
S 225     S   208
R 226     H   209
L 227     P   210
G 228     T   211
D 229     Q   212
P 230     T   213
A 231     S   214
E 232     E   215
Y 233     Q   216
A 234     C   217
H 235     G   218
L 236     Q   219
V 237     N   220
Q 238     F   221
M 239     V   222
V 240     K   223
I 241     A   224
E 242     I   225
N 243     E   226
P 244     A   227
F 245     N   228
L 246     K   229
N 247     N   230
G 248     G   231
E 249     A   232
V 250     I   233
I 251     W   234
R 252     K   235
L 253     L   236
D 254     D   237
G 255     L   238
A 256     G   239
I 257     T   240
R 258     L   241
M 259     E   242
Q 260     A   243
P 261     I   244
TER
END

