
PFRMAT AL
TARGET T0113
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  4
PARENT 1ybv_B
M 1 L 20
A 2 G 21
A 3 P 22
A 4 Q 23
V 5 S 24
R 6 A 25
S 7 S 26
V 8 L 27
K 9 E 28
G 10 G 29
L 11 K 30
V 12 V 31
A 13 A 32
V 14 L 33
I 15 V 34
T 16 T 35
G 17 G 36
G 18 A 37
A 19 G 38
S 20 R 39
G 21 G 40
L 22 I 41
G 23 G 42
L 24 R 43
S 25 E 44
T 26 M 45
A 27 A 46
K 28 M 47
R 29 E 48
L 30 L 49
V 31 G 50
G 32 R 51
Q 33 R 52
G 34 G 53
A 35 C 54
T 36 K 55
A 37 V 56
V 38 I 57
L 39 V 58
L 40 N 59
D 41 Y 60
V 42 A 61
P 43 N 62
N 44 T 64
S 45 E 65
E 46 S 66
G 47 A 67
E 48 E 68
T 49 E 69
E 50 V 70
A 51 V 71
K 52 A 72
K 53 A 73
L 54 I 74
G 55 G 78
G 56 S 79
N 57 D 80
C 58 A 81
I 59 A 82
F 60 C 83
A 61 V 84
P 62 K 85
A 63 A 86
N 64 N 87
V 65 V 88
T 66 G 89
S 67 V 90
E 68 V 91
K 69 E 92
E 70 D 93
V 71 I 94
Q 72 V 95
A 73 R 96
A 74 M 97
L 75 F 98
T 76 E 99
L 77 E 100
A 78 A 101
K 79 V 102
E 80 K 103
K 81 I 104
F 82 F 105
G 83 G 106
R 84 K 107
I 85 L 108
D 86 D 109
V 87 I 110
A 88 V 111
V 89 C 112
N 90 S 113
C 91 N 114
A 92 S 115
G 93 G 116
I 94 V 117
A 95 V 118
V 96 S 119
A 97 F 120
K 104 G 121
K 105 H 122
N 106 V 123
Q 107 K 124
V 108 D 125
H 109 V 126
T 110 T 127
L 111 P 128
E 112 E 129
D 113 E 130
F 114 F 131
Q 115 D 132
R 116 R 133
V 117 V 134
I 118 F 135
N 119 T 136
V 120 I 137
N 121 N 138
L 122 T 139
I 123 R 140
G 124 G 141
T 125 Q 142
F 126 F 143
N 127 F 144
V 128 V 145
I 129 A 146
R 130 R 147
L 131 E 148
V 132 A 149
A 133 Y 150
G 134 K 151
V 135 H 152
M 136 L 153
G 137 E 154
Q 138 I 155
R 147 G 156
G 148 G 157
V 149 R 158
I 150 L 159
I 151 I 160
N 152 L 161
T 153 M 162
A 154 G 163
S 155 S 164
V 156 I 165
A 157 T 166
A 158 G 167
F 159 Q 168
E 160 A 169
G 161 A 171
Q 162 V 172
V 163 P 173
G 164 K 174
Q 165 H 175
A 166 A 176
A 167 V 177
Y 168 Y 178
S 169 S 179
A 170 G 180
S 171 S 181
K 172 K 182
G 173 G 183
G 174 A 184
I 175 I 185
V 176 E 186
G 177 T 187
M 178 F 188
T 179 A 189
L 180 R 190
P 181 C 191
I 182 M 192
A 183 A 193
R 184 I 194
D 185 D 195
L 186 M 196
A 187 A 197
P 188 D 198
I 189 K 199
G 190 K 200
I 191 I 201
R 192 T 202
V 193 V 203
V 194 N 204
T 195 V 205
I 196 V 206
A 197 A 207
P 198 P 208
G 199 G 209
L 200 G 210
F 201 I 211
A 202 K 212
T 203 T 213
P 204 D 214
L 205 M 215
L 206 Y 216
T 207 H 217
T 208 A 218
L 209 V 219
P 210 E 233
D 211 E 234
K 212 V 235
V 213 D 236
R 214 E 237
N 215 Y 238
F 216 A 239
L 217 A 240
A 218 V 241
S 219 Q 242
Q 220 W 243
V 221 S 244
P 222 P 245
F 223 L 246
S 225 R 247
R 226 R 248
L 227 V 249
G 228 G 250
D 229 L 251
P 230 P 252
A 231 I 253
E 232 D 254
Y 233 I 255
A 234 A 256
H 235 R 257
L 236 V 258
V 237 V 259
Q 238 C 260
M 239 F 261
V 240 L 262
I 241 A 263
E 242 S 264
N 243 G 267
P 244 G 268
F 245 W 269
L 246 V 270
N 247 T 271
G 248 G 272
E 249 K 273
V 250 V 274
I 251 I 275
R 252 G 276
L 253 I 277
D 254 D 278
G 255 G 279
A 256 G 280
I 257 A 281
R 258 C 282
M 259 M 283
TER
END

