
PFRMAT SS
TARGET T0113
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0113.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 659.662
METHOD
MODEL 1
M C 0.819
A C 0.798
A C 0.816
A C 0.802
V C 0.730
R C 0.619
S C 0.670
V C 0.821
K C 0.909
G C 0.954
L C 0.666
V E 0.816
A E 0.961
V E 0.988
I E 0.967
T E 0.856
G C 0.563
G C 0.879
A C 0.712
S H 0.585
G H 0.777
L H 0.921
G H 0.959
L H 0.989
S H 0.993
T H 0.997
A H 0.996
K H 0.996
R H 0.994
L H 0.992
V H 0.989
G H 0.973
Q H 0.890
G C 0.985
A C 0.955
T C 0.558
A E 0.965
V E 0.993
L E 0.980
L E 0.884
D C 0.501
V C 0.890
P C 0.969
N H 0.878
S H 0.946
E H 0.972
G H 0.986
E H 0.992
T H 0.993
E H 0.991
A H 0.988
K H 0.982
K H 0.967
L H 0.855
G C 0.892
G C 0.956
N C 0.828
C E 0.657
I E 0.928
F E 0.968
A E 0.941
P E 0.833
A E 0.552
N C 0.682
V C 0.843
T C 0.921
S C 0.948
E H 0.944
K H 0.965
E H 0.975
V H 0.992
Q H 0.994
A H 0.996
A H 0.996
L H 0.995
T H 0.996
L H 0.993
A H 0.986
K H 0.980
E H 0.970
K H 0.930
F H 0.667
G C 0.945
R C 0.926
I C 0.795
D C 0.662
V E 0.943
A E 0.972
V E 0.953
N E 0.784
C C 0.619
A C 0.543
G C 0.421
I C 0.504
A C 0.632
V C 0.816
A C 0.954
I C 0.781
K C 0.719
T C 0.652
Y C 0.692
H C 0.717
E C 0.703
K C 0.799
K C 0.787
N C 0.760
Q C 0.750
V C 0.760
H C 0.867
T C 0.942
L H 0.928
E H 0.930
D H 0.941
F H 0.957
Q H 0.962
R H 0.963
V H 0.942
I H 0.921
N H 0.835
V H 0.697
N C 0.496
L H 0.703
I H 0.879
G H 0.955
T H 0.980
F H 0.990
N H 0.995
V H 0.995
I H 0.992
R H 0.992
L H 0.982
V H 0.951
A H 0.867
G H 0.771
V H 0.664
M H 0.523
G C 0.687
Q C 0.931
N H 0.654
E H 0.624
P H 0.582
D C 0.521
Q C 0.705
G C 0.879
G C 0.934
Q C 0.949
R C 0.910
G E 0.534
V E 0.871
I E 0.982
I E 0.989
N E 0.972
T E 0.918
A E 0.708
S E 0.538
V C 0.467
A C 0.442
A C 0.405
F C 0.498
E C 0.602
G C 0.749
Q C 0.828
V C 0.808
G C 0.707
Q C 0.514
A H 0.588
A H 0.778
Y H 0.857
S H 0.927
A H 0.955
S H 0.972
K H 0.985
G H 0.986
G H 0.990
I H 0.989
V H 0.990
G H 0.990
M H 0.985
T H 0.983
L H 0.985
P H 0.978
I H 0.968
A H 0.969
R H 0.946
D H 0.921
L H 0.870
A H 0.532
P C 0.514
I C 0.736
G C 0.960
I E 0.521
R E 0.920
V E 0.975
V E 0.974
T E 0.958
I E 0.856
A E 0.504
P C 0.774
G C 0.786
L C 0.651
F C 0.665
A C 0.712
T C 0.795
P C 0.731
L C 0.618
L C 0.593
T C 0.615
T C 0.668
L C 0.710
P C 0.809
D H 0.684
K H 0.768
V H 0.828
R H 0.849
N H 0.888
F H 0.874
L H 0.844
A H 0.792
S H 0.734
Q H 0.588
V C 0.570
P C 0.600
F C 0.616
P C 0.649
S C 0.727
R C 0.754
L C 0.814
G C 0.876
D C 0.930
P H 0.917
A H 0.962
E H 0.974
Y H 0.970
A H 0.977
H H 0.979
L H 0.972
V H 0.972
Q H 0.967
M H 0.945
V H 0.851
I H 0.641
E C 0.469
N C 0.638
P C 0.752
F C 0.790
L C 0.846
N C 0.790
G C 0.641
E E 0.672
V E 0.897
I E 0.923
R E 0.876
L E 0.689
D C 0.707
G C 0.841
A C 0.805
I C 0.598
R C 0.652
M C 0.662
Q C 0.837
P C 0.971
END

