
PFRMAT AL
TARGET T0114
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.19 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs2arna
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 2arn_A
I   2     D    19
N   3     M    20
R   4     S    21
T   5     N    22
D   6     V    23
C   7     C    24
N   8     Q    25
E   9     P    26
N  10     T    27
S  11     E    28
Y  12     F    29
L  13     I    30
E  14     S    31
I  15     R    32
H  16     H    33
N  17     N    34
N  18     I    35
E  19     E    36
G  20     G    37
R  21     I    38
D  22     F    39
T  23     T    40
L  24     F    41
C  25     C    46
F  26     V    47
A  27     A    48
N  28     T    49
A  29     V    50
G  30     G    51
T  31     Y    52
M  32     Q    53
P  33     P    54
V  34     Q    55
A  35     E    56
I  36     L    57
Y  37     L    58
G  38     G    59
V  39     K    60
N  40     N    61
W  41     I    62
V  42     V    63
E  43     E    64
S  44     F    65
G  45     D    71
N  46     Q    72
N  47     Q    73
V  48     L    74
V  49     L    75
T  50     R    76
L  51     D    77
Q  52     S    78
F  53     F    79
Q  54     Q    80
R  55     Q    81
N  56     V    82
L  57     V    83
S  58     K    84
D  59     L    85
P  60     K    86
R  61     G   86A
L  62     Q   86B
E  63     V    87
T  64     L    88
I  65     S    89
T  66     V    90
L  67     M    91
Q  68     F    92
K  69     R    93
W  70     F    94
G  71     R    95
S  72     S    96
W  73     W    99
N  74     L   100
P  75     W   101
G  76     M   102
H  77     R   103
I  78     T   104
H  79     S   105
E  80     S   106
I  81     F   107
L  82     T   108
S  83     F   109
I  84     Q   110
R  85     N   111
I  86     P   112
Y  87     Y   113
TER
END

