
PFRMAT SS
TARGET T0114
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
M C 0.56
I E 0.44
N C 0.56
R C 0.56
T C 0.56
D C 0.67
C C 0.67
N C 0.67
E C 0.67
N C 0.78
S C 0.56
Y E 0.56
L E 0.56
E E 0.56
I E 0.56
H C 0.56
N C 0.56
N C 0.78
E C 0.78
G C 0.89
R C 0.89
D C 0.67
T E 0.78
L E 0.78
C E 0.78
F E 0.78
A E 0.56
N C 0.56
A C 0.78
G C 0.89
T C 0.78
M C 0.78
P C 0.56
V E 0.67
A E 0.78
I E 0.78
Y E 0.67
G C 0.67
V C 0.89
N E 0.78
W E 0.89
V E 0.89
E E 0.78
S C 0.56
G C 1.00
N C 0.89
N C 0.78
V E 0.89
V E 0.89
T E 0.89
L E 0.78
Q E 0.67
F E 0.56
Q C 0.56
R C 0.56
N C 0.56
L C 0.67
S C 0.78
D C 0.78
P C 0.67
R C 0.67
L H 0.56
E C 0.56
T E 0.56
I E 0.78
T E 0.78
L E 0.67
Q E 0.56
K C 0.56
W C 0.67
G C 0.78
S C 0.78
W C 0.78
N C 0.89
P C 0.89
G C 0.89
H C 0.67
I C 0.56
H E 0.56
E E 0.56
I E 0.56
L H 0.44
S E 0.44
I E 0.44
R E 0.44
I E 0.56
Y E 0.44
END
 - - - - - - - - - - - - - - - - - -
 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
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