
PFRMAT AL
TARGET T0115
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1ryp_B
M    1 M 1
R    2 R 4
E    3 Y 5
I    4 S 6
M    5 F 7
K    6 S 8
V    7 L 9
R    8 T 10
V    9 T 11
K   10 F 12
A   11 S 13
P   12 P 14
S   15 S 15
A   16 G 16
N   17 K 17
L   18 L 18
G   19 G 19
V   20 Q 30
G   21 G 31
F   22 V 32
D   23 T 33
V   24 S 34
F   25 L 35
G   26 G 36
L   27 I 37
C   28 A 56
L   29 M 57
K   30 S 58
E   31 E 59
P   32 T 60
Y   33 L 61
D   34 S 62
V   35 K 63
I   36 V 64
E   37 S 65
V   38 L 66
E   39 L 67
A   40 T 68
I   41 P 69
D   42 D 70
D   43 I 71
K   44 G 72
E   45 A 73
I   46 V 74
I   47 Y 75
I   48 S 76
E   49 H 94
V   50 T 95
D   51 S 96
D   52 Y 97
K   53 K 98
N   54 R 99
I   55 I 100
P   56 Y 101
T   57 G 102
D   58 E 103
P   59 P 106
D   60 T 107
K   61 K 108
N   62 L 109
V   63 L 110
A   64 V 111
G   65 S 112
I   66 E 113
V   67 V 114
A   68 A 115
K   69 K 116
K   70 I 117
M   71 M 118
I   72 Q 119
D   73 E 120
D   74 A 121
F   75 T 122
N   76 V 127
I   77 R 128
G   78 P 129
K   79 F 130
G   80 G 131
V   81 V 132
K   82 S 133
I   83 L 134
T   84 L 135
I   85 I 136
K   86 F 142
K   87 N 143
G   88 G 144
V   89 F 145
K   90 P 152
A   91 S 153
G   92 G 154
S   93 S 155
G   94 G 165
L   95 K 166
G   96 G 167
S   97 S 168
S   98 V 169
A   99 A 170
A  100 A 171
S  101 K 172
Y  107 T 173
A  108 F 174
I  109 L 175
N  110 E 176
E  111 K 177
L  112 R 178
F  113 W 179
K  114 N 180
L  115 D 181
N  116 E 182
L  117 L 183
D  118 E 184
K  119 L 185
L  120 E 186
K  121 D 187
L  122 A 188
V  123 I 189
D  124 H 190
Y  125 I 191
A  126 A 192
S  127 L 193
Y  128 L 194
G  129 T 195
E  130 L 196
L  131 K 197
A  132 E 198
S  133 S 199
S  134 V 200
G  135 G 202
A  136 E 203
K  137 F 204
H  138 N 205
A  139 G 206
D  140 D 207
N  141 T 208
V  142 I 209
A  143 E 210
P  144 L 211
A  145 A 212
I  146 I 213
F  147 I 214
G  148 G 215
T  154 D 216
N  155 E 217
Y  156 N 218
E  157 P 219
P  158 D 220
L  159 L 222
E  160 G 223
V  161 Y 224
L  162 T 225
H  163 G 226
I  164 I 227
P  165 P 228
I  166 T 229
D  167 D 230
F  168 K 231
K  169 G 232
L  170 P 233
P  177 R 234
N  178 F 235
I  179 R 236
S  180 K 237
I  181 L 238
N  182 T 239
T  183 S 240
K  184 Q 241
E  185 E 242
A  186 I 243
R  187 N 244
E  188 D 245
I  189 R 246
L  190 L 247
P  191 E 248
K  192 A 249
A  193 L 250
TER
END

