
PFRMAT AL
TARGET T0115
AUTHOR 5505-7671-7042
REMARK
REMARK 1SBP (model 2) has some structural similarity with 1NIP (model 1).
REMARK
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1sbp
C  13    A  49
T  14    T  50
S  15    S  51
A  16    V  52
N  17    I  53
L  18    N  54
G  19    G  55
V  20    I  56
G  21    E  57
F  22    A  58
D  23    D  59
V  24    T  60
F  25    V  61
G  26    T  62
L  27    L  63
C  28    A  64
L  29    L  65
K  30    A  66
E  31    Y  67
P  32    D  68
Y  33    V  69
D  34    N  70
V  35    A  71
I  36    I  72
E  37    A  73
V  38    E  74
E  39    R  75
A  40    G  76
I  41    R  77
D  42    I  78
D  43    D  79
K  44    K  80
E  45    N  81
I  46    W  82
I  47    I  83
I  48    K  84
E  49    R  85
V  50    L  86
D  51    P  87
D  52    D  88
K  53    D  89
N  54    S  90
I  55    A  91
P  56    P  92
T  57    Y  93
D  58    T  94
K  61    S  95
N  62    T  96
V  63    I  97
A  64    V  98
G  65    F  99
I  66    L 100
V  67    V 101
A  68    R 102
K  69    K 103
K  70    K 107
M  71    Q 108
I  72    I 109
D  73    H 110
D  74    D 111
F  75    W 112
N  76    N 113
I  77    I 116
G  78    K 117
K  79    P 118
G  80    G 119
V  81    V 120
K  82    S 121
I  83    V 122
T  84    I 123
I  85    T 124
K  86    P 125
K  87    N 126
G  88    P 127
V  89    K 128
K  90    S 129
A  91    S 130
G  92    G 131
S 102    L 138
A 103    A 139
G 104    A 140
T 105    W 141
A 106    G 142
Y 107    Y 143
A 108    A 144
L 112    L 145
F 113    H 146
K 114    H 147
L 115    N 148
N 116    N 149
L 117    N 150
D 118    D 151
K 119    Q 152
L 120    A 153
K 121    K 154
L 122    A 155
V 123    E 156
D 124    D 157
Y 125    F 158
A 126    V 159
S 127    K 160
Y 128    N 165
G 129    V 166
E 130    E 167
L 131    V 168
A 132    L 169
S 133    D 170
S 134    S 171
G 135    G 172
A 136    A 173
K 137    R 174
H 138    G 175
A 139    S 176
D 140    T 177
N 141    N 178
V 142    T 179
A 143    F 180
I 146    V 181
F 147    E 182
G 148    R 183
G 149    G 184
F 150    I 185
T 151    G 186
M 152    D 187
V 153    V 188
T 154    L 189
N 155    I 190
Y 156    A 191
E 157    W 192
P 158    E 193
L 159    N 194
E 160    E 195
V 161    A 196
L 162    L 197
H 163    L 198
I 164    A 199
P 165    T 200
I 166    N 201
D 167    E 202
F 168    L 203
K 169    G 204
L 170    K 205
D 171    D 206
I 172    K 207
L 173    F 208
I 174    I 210
A 175    V 211
I 176    T 212
P 177    P 213
N 178    S 214
I 179    E 215
S 180    S 216
I 181    I 217
N 182    L 218
T 183    A 219
K 184    E 220
E 185    P 221
A 186    T 222
R 187    V 223
E 188    S 224
I 189    V 225
L 190    V 226
P 191    D 227
K 192    K 228
A 193    V 229
V 194    V 230
G 195    E 231
L 196    K 232
K 197    K 233
D 198    D 234
V 200    T 235
N 201    K 236
N 202    A 237
V 203    V 238
G 204    A 239
K 205    E 240
A 206    A 241
M 209    Y 242
V 210    L 243
Y 211    K 244
A 212    Y 245
L 213    L 246
Y 214    Y 247
N 215    S 248
K 216    P 249
D 217    E 250
V 234    V 267
R 235    A 268
G 236    K 269
K 237    K 270
L 238    Y 271
I 239    D 272
P 240    D 273
N 241    A 274
Y 242    F 275
F 243    P 276
K 244    K 277
I 245    L 278
K 246    K 279
E 247    L 280
E 248    F 281
V 249    T 282
K 250    I 283
D 251    D 284
K 252    E 285
V 253    V 286
Y 254    F 287
G 255    G 288
TER
END

