
PFRMAT AL
TARGET T0116
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1taq
E 183    E 274
L 184    R 275
L 185    L 276
E 186    E 277
N 187    F 278
G 188    G 279
A 189    S 280
F 190    L 281
L 191    L 282
D 192    H 283
E 193    E 284
F 194    F 285
R 195    G 286
K 196    L 287
R 197    E 289
F 198    S 290
P 199    P 291
V 200    K 292
M 201    A 293
L 202    L 294
S 203    E 295
E 204    E 296
A 205    A 297
P 206    P 298
F 207    W 299
E 208    P 300
P 209    P 301
E 210    E 303
G 211    G 304
E 212    A 305
G 222    A 319
A 223    D 320
L 224    L 321
L 225    L 322
A 226    A 323
Y 227    L 324
A 228    A 325
Q 229    A 326
T 231    A 327
Q 232    R 328
G 233    G 329
G 234    G 330
A 235    R 331
L 236    V 332
S 237    H 333
L 238    R 334
Q 239    A 335
P 240    P 336
D 245    E 337
P 246    P 338
G 247    Y 339
A 248    K 340
F 249    A 341
M 250    L 342
R 251    R 343
L 252    L 345
P 253    K 346
E 254    E 347
A 255    A 348
T 256    R 349
L 257    L 356
R 258    S 357
A 259    V 358
L 260    L 359
E 261    A 360
V 262    L 361
F 263    R 362
E 264    E 363
P 265    G 364
L 266    L 365
R 267    G 366
G 268    G 370
Q 269    D 371
D 270    D 372
T 271    P 373
L 272    M 374
F 273    L 375
S 274    Y 378
V 275    L 379
L 276    L 380
D 277    D 381
E 278    P 382
T 279    S 383
R 280    N 384
T 281    T 385
A 282    T 386
P 283    P 387
G 284    A 391
R 285    R 392
R 286    R 393
L 287    Y 394
L 288    G 395
Q 289    G 396
S 290    E 397
W 291    W 398
L 292    T 399
R 293    E 400
H 294    E 401
P 295    A 402
L 296    G 403
D 298    E 404
R 299    R 405
G 300    A 406
P 301    A 407
L 302    L 408
E 303    S 409
A 304    E 410
R 305    R 411
L 306    L 412
D 307    G 418
R 308    R 419
V 309    L 420
E 310    E 421
G 311    G 422
F 312    E 423
V 313    E 424
R 314    R 425
E 315    L 426
G 316    L 427
A 317    W 428
L 318    L 429
R 319    R 431
E 320    E 432
G 321    V 433
V 322    E 434
R 323    R 435
R 324    P 436
L 325    L 437
L 326    S 438
Y 327    A 439
R 328    V 440
L 329    L 441
A 330    A 442
D 331    H 443
L 332    M 444
E 333    E 445
R 334    A 446
L 335    T 447
A 336    G 448
T 337    V 449
R 338    R 450
L 339    L 451
E 340    D 452
L 341    V 453
G 342    A 454
R 343    Y 455
A 344    L 456
S 345    R 457
P 346    A 458
K 347    L 459
D 348    S 460
L 349    L 461
G 350    E 462
A 351    V 463
L 352    A 464
R 353    E 465
R 354    E 466
S 355    I 467
L 356    A 468
Q 357    R 469
I 358    L 470
L 359    E 471
P 360    A 472
E 361    E 473
L 362    V 474
R 363    F 475
A 364    R 476
L 365    L 477
L 366    A 478
G 367    G 479
E 368    H 480
E 369    P 481
V 370    F 482
G 371    N 483
L 372    L 484
P 373    N 485
D 374    S 486
K 379    R 487
E 380    D 488
E 381    Q 489
L 382    L 490
E 383    E 491
A 384    R 492
A 385    V 493
L 386    L 494
V 387    F 495
E 388    D 496
D 389    E 497
P 390    P 501
P 391    A 502
L 392    I 503
K 393    G 504
V 394    K 505
S 395    T 506
E 396    E 507
G 397    K 508
G 398    T 509
L 399    G 510
I 400    K 511
R 401    R 512
E 402    S 513
G 403    T 514
Y 404    S 515
D 405    A 516
P 406    A 517
D 407    V 518
L 408    L 519
D 409    E 520
A 410    A 521
L 411    L 522
R 412    R 523
A 413    E 524
A 414    A 525
H 415    H 526
TER
END

