
PFRMAT AL
TARGET T0116
AUTHOR 7573-5202-7463
METHOD 
METHOD The target profile was searched against database of profiles built
METHOD from 35% NR subset of PDB. Each profile was generated by running 5
METHOD iterations of PSI-BLAST and dumping the scoring matrix.  The significance
METHOD of each alignment was evaluated by randomly shuffling the template
METHOD profile.  Top-scoring hits (Z-score > 4.0) were checked for compatability
METHOD with the PHD and PSIPRED secondary structure preditions and with the 
METHOD published secondary structure as cited on the CASP target page.  
METHOD
MODEL 5
PARENT 1b0u_A
N 187    N   5 
G 188    K   6 
A 189    L   7 
F 190    H   8 
L 191    V   9 
D 192    I  10 
E 193    D  11 
F 194    L  12 
R 195    H  13 
K 196    K  14 
R 197    R  15 
F 198    Y  16 
P 199    G  17 
V 200    G  18 
M 201    H  19 
L 202    E  20 
S 203    V  21 
E 204    L  22 
A 205    K  23 
P 206    G  24 
F 207    V  25 
E 208    S  26 
P 209    L  27 
E 210    Q  28 
G 211    A  29 
R 219    R  30 
A 220    A  31 
R 221    G  32 
G 222    D  33 
A 223    V  34 
L 224    I  35 
L 225    S  36 
A 226    I  37 
Y 227    I  38 
A 228    G  39 
Q 229    S  40 
R 230    S  41 
T 231    G  42 
Q 232    S  43 
G 233    G  44 
G 234    K  45 
A 235    S  46 
L 236    T  47 
S 237    F  48 
L 238    L  49 
Q 239    R  50 
P 240    C  51 
F 241    I  52 
R 242    N  53 
F 243    F  54 
Y 244    L  55 
D 245    E  56 
P 246    K  57 
G 247    G  61 
A 248    A  62 
F 249    I  63 
M 250    I  64 
R 251    V  65 
L 252    N  66 
P 253    G  67 
E 254    Q  68 
A 255    N  69 
T 256    I  70 
L 257    N  71 
R 258    L  72 
A 259    V  73 
L 260    R  74 
E 261    D  75 
V 262    K  76 
F 263    D  77 
E 264    G  78 
P 265    Q  79 
L 266    L  80 
R 267    K  81 
G 268    V  82 
Q 269    A  83 
D 270    D  84 
T 271    K  85 
L 272    N  86 
F 273    Q  87 
S 274    L  88 
V 275    R  89 
L 276    L  90 
D 277    L  91 
E 278    R  92 
T 279    T  93 
R 280    R  94 
T 281    L  95 
A 282    T  96 
P 283    M  97 
G 284    V  98 
R 285    F  99 
R 286    Q 100 
L 287    H 101 
L 288    F 102 
Q 289    N 103 
S 290    L 104 
W 291    W 105 
L 292    S 106 
R 293    H 107 
H 294    M 108 
P 295    T 109 
L 296    V 110 
L 297    L 111 
D 298    E 112 
R 299    N 113 
P 301    V 114 
L 302    M 115 
E 303    E 116 
A 304    A 117 
R 305    P 118 
L 306    I 119 
D 307    Q 120 
R 308    V 121 
V 309    L 122 
E 310    G 123 
V 313    L 124 
R 314    S 125 
E 315    K 126 
G 316    H 127 
A 317    D 128 
L 318    A 129 
R 319    R 130 
E 320    E 131 
G 321    R 132 
V 322    A 133 
R 323    L 134 
R 324    K 135 
L 325    Y 136 
L 326    L 137 
Y 327    A 138 
R 328    K 139 
L 329    V 140 
A 330    G 141 
D 331    I 142 
L 332    D 143 
E 333    E 144 
R 334    R 145 
L 335    A 146 
A 336    Q 147 
T 337    G 148 
R 338    K 149 
L 339    Y 150 
E 340    P 151 
L 341    V 152 
G 342    H 153 
R 343    L 154 
A 344    S 155 
G 350    G 156 
A 351    G 157 
L 352    Q 158 
R 353    Q 159 
R 354    Q 160 
S 355    R 161 
L 356    V 162 
Q 357    S 163 
I 358    I 164 
L 359    A 165 
P 360    R 166 
E 361    A 167 
L 362    L 168 
R 363    A 169 
A 364    M 170 
L 365    E 171 
L 366    P 172 
G 367    D 173 
E 368    V 174 
E 369    L 175 
V 370    L 176 
G 371    F 177 
L 372    D 178 
P 373    E 179 
D 374    P 180 
L 375    T 181 
S 376    S 182 
P 377    A 183 
L 378    L 184 
K 379    D 185 
E 380    P 186 
E 381    E 187 
L 382    L 188 
E 383    V 189 
A 384    G 190 
A 385    E 191 
L 386    V 192 
V 387    L 193 
E 388    R 194 
D 389    I 195 
P 390    M 196 
P 391    Q 197 
L 392    Q 198 
K 393    L 199 
V 394    A 200 
S 395    E 201 
E 396    E 202 
G 397    G 203 
R 401    K 204 
E 402    T 205 
G 403    M 206 
Y 404    V 207 
D 405    V 208 
P 406    V 209 
D 407    T 210 
L 408    H 211 
D 409    E 212 
A 410    M 213 
L 411    G 214 
R 412    F 215 
A 413    A 216 
A 414    R 217 
H 415    H 218 
R 416    V 219 
E 417    S 220 
G 418    S 221 
V 419    H 222 
A 420    V 223 
Y 421    I 224 
F 422    F 225 
L 423    L 226 
E 424    H 227 
L 425    Q 228 
E 426    G 229 
E 427    K 230 
R 428    I 231 
E 429    E 232 
R 430    E 233 
E 431    E 234 
R 432    G 235 
T 433    D 236 
G 434    P 237 
I 435    E 238 
P 436    Q 239 
T 437    V 240 
L 438    F 241 
K 439    G 242 
V 440    N 243 
G 441    P 244 
Y 442    Q 245 
N 443    S 246 
A 444    P 247 
V 445    R 248 
F 446    L 249 
G 447    Q 250 
Y 448    Q 251 
Y 449    F 252 
L 450    L 253 
E 451    K 254 
V 452    G 255 
T 453    S 256 
R 454    L 257 
P 455    K 258 
Y 456    K 259 
Y 457    L 260 
E 458    E 261 
R 459    H 262 
TER    
END      


