
PFRMAT AL
TARGET T0117
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 3adk
K   13 M 1
Y   14 E 2
A   15 E 3
E   16 K 4
G   17 L 5
T   18 K 6
Q   19 K 7
P   20 S 8
F   21 K 9
T   22 I 10
V   23 I 11
L   24 F 12
I   25 V 13
E   26 V 14
G   27 G 15
N   28 G 16
I   29 P 17
G   30 G 18
S   31 S 19
G   32 G 20
K   33 K 21
T   34 G 22
T   35 T 23
Y   36 Q 24
L   37 C 25
N   38 E 26
H   39 K 27
F   40 I 28
E   41 V 29
K   42 Q 30
Y   43 K 31
K   44 Y 32
N   45 G 33
D   46 Y 34
I   47 T 35
C   48 H 36
L   49 L 37
L   50 S 38
T   51 T 39
E   52 E 46
V   54 V 47
E   55 S 48
K   56 S 49
N   59 G 50
V   60 S 51
N   61 A 52
G   62 R 53
V   63 G 54
N   64 K 55
L   65 M 56
L   66 L 57
E   67 S 58
L   68 E 59
M   69 I 60
Y   70 M 61
K   71 E 62
D   72 K 63
P   73 G 64
K   74 Q 65
K   75 L 66
W   76 V 67
P   79 P 68
F   80 L 69
Q   81 E 70
S   82 T 71
Y   83 V 72
V   84 L 73
T   85 D 74
L   86 M 75
T   87 L 76
M   88 R 77
L   89 D 78
Q   90 A 79
S   91 M 80
H   92 V 81
T   93 A 82
A   94 K 83
P   95 V 84
T   96 D 85
N   97 T 86
K   98 S 87
K   99 K 88
L  100 G 89
K  101 F 90
I  102 L 91
M  103 I 92
E  104 D 93
G  122 G 94
S  123 Y 95
L  124 P 96
E  125 R 97
Q  126 E 98
E  133 V 99
E  134 K 100
W  135 Q 101
Y  136 G 102
K  137 E 103
F  138 E 104
I  139 F 105
E  140 E 106
E  141 R 107
S  142 K 108
I  143 I 109
H  144 G 110
Q  146 Q 111
A  147 P 112
D  148 T 113
L  149 L 114
I  150 L 115
I  151 L 116
Y  152 Y 117
L  153 V 118
R  154 D 119
T  155 A 120
S  156 G 121
P  157 P 122
E  158 E 123
V  159 T 124
A  160 M 125
Y  161 T 126
E  162 K 127
R  163 R 128
I  164 L 129
R  165 L 130
Q  166 K 131
R  167 R 132
A  168 G 137
R  169 R 138
S  170 V 139
E  171 D 140
E  172 D 141
S  173 N 142
C  174 E 143
V  175 E 144
P  176 T 145
L  177 I 146
K  178 K 147
Q  181 K 148
E  182 R 149
L  183 L 150
H  184 E 151
E  185 T 152
L  186 Y 153
H  187 Y 154
E  188 K 155
D  189 A 156
W  190 T 157
L  191 V 160
I  192 I 161
H  193 A 162
Q  194 F 163
R  195 Y 164
R  196 E 165
P  197 K 166
Q  198 R 167
S  199 G 168
C  200 I 169
V  202 V 170
L  203 R 171
V  204 K 172
L  205 V 173
D  206 N 174
A  207 A 175
D  208 E 176
L  209 G 177
N  210 S 178
L  211 V 179
E  212 D 180
N  213 D 181
I  214 V 182
Y  218 F 183
Q  219 S 184
R  220 Q 185
I  225 V 186
F  226 C 187
D  227 T 188
A  228 H 189
I  229 L 190
S  230 D 191
S  231 T 192
N  232 L 193
Q  233 K 194
TER
END

