
PFRMAT SS
TARGET T0117
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.97
A C 0.75
E C 0.62
A C 0.64
A C 0.52
S C 0.66
C C 0.77
A C 0.88
R C 0.77
K C 0.58
G C 0.84
T C 0.83
K C 0.83
Y C 0.77
A C 0.57
E C 0.55
G C 0.72
T C 0.51
Q C 0.34
P E 0.39
F E 0.73
T E 0.89
V E 0.95
L E 0.96
I E 0.91
E E 0.78
G C 0.65
N C 0.78
I C 0.69
G C 0.24
S C 0.24
G C 0.82
K H 0.80
T H 0.86
T H 0.89
Y H 0.96
L H 0.95
N H 0.95
H H 0.96
F H 0.97
E H 0.95
K H 0.90
Y H 0.69
K C 0.75
N C 0.96
D C 0.89
I E 0.29
C E 0.76
L E 0.90
L E 0.53
T C 0.56
E C 0.75
P C 0.71
V C 0.66
E C 0.42
K C 0.26
W C 0.19
R C 0.50
N C 0.58
V C 0.68
N C 0.62
G C 0.78
V C 0.55
N H 0.75
L H 0.84
L H 0.91
E H 0.93
L H 0.90
M H 0.87
Y H 0.86
K H 0.59
D H 0.23
P H 0.86
K H 0.83
K H 0.64
W H 0.59
A H 0.85
M H 0.92
P H 0.95
F H 0.95
Q H 0.96
S H 0.96
Y H 0.97
V H 0.96
T H 0.95
L H 0.95
T H 0.95
M H 0.92
L H 0.83
Q H 0.64
S H 0.26
H H 0.26
T H 0.34
A H 0.25
P H 0.04
T C 0.50
N C 0.88
K C 0.90
K C 0.84
L C 0.03
K E 0.81
I E 0.95
M E 0.90
E E 0.62
R E 0.11
S E 0.02
I E 0.05
F C 0.63
S C 0.19
A C 0.11
R H 0.71
Y H 0.86
C H 0.88
F H 0.89
V H 0.94
E H 0.91
N H 0.88
M H 0.64
R C 0.07
R C 0.60
N C 0.84
G C 0.91
S C 0.93
L C 0.85
E C 0.93
Q H 0.84
G H 0.89
M H 0.93
Y H 0.96
N H 0.96
T H 0.95
L H 0.97
E H 0.96
E H 0.95
W H 0.96
Y H 0.95
K H 0.94
F H 0.84
I H 0.65
E H 0.41
E C 0.04
S C 0.36
I C 0.55
H C 0.80
V C 0.89
Q C 0.92
A C 0.93
D C 0.90
L E 0.89
I E 0.93
I E 0.92
Y E 0.94
L E 0.92
R E 0.76
T C 0.72
S C 0.94
P H 0.83
E H 0.93
V H 0.91
A H 0.94
Y H 0.93
E H 0.95
R H 0.96
I H 0.94
R H 0.88
Q H 0.61
R C 0.25
A C 0.94
R C 0.91
S C 0.72
E C 0.29
E C 0.25
S C 0.33
C C 0.74
V C 0.92
P C 0.94
L H 0.88
K H 0.94
Y H 0.96
L H 0.96
Q H 0.96
E H 0.96
L H 0.97
H H 0.96
E H 0.95
L H 0.94
H H 0.92
E H 0.92
D H 0.93
W H 0.85
L H 0.84
I H 0.68
H H 0.39
Q H 0.06
R C 0.46
R C 0.69
P C 0.83
Q C 0.86
S C 0.89
C C 0.74
K C 0.29
V E 0.73
L E 0.92
V E 0.93
L E 0.91
D E 0.41
A E 0.21
D E 0.10
L C 0.78
N C 0.60
L H 0.83
E H 0.84
N H 0.87
I H 0.67
G H 0.14
T C 0.53
E H 0.67
Y H 0.68
Q H 0.68
R C 0.15
S C 0.40
E H 0.90
S H 0.86
S H 0.91
I H 0.95
F H 0.93
D H 0.94
A H 0.94
I H 0.89
S H 0.83
S H 0.58
N H 0.51
Q H 0.04
Q C 0.13
P C 0.10
S C 0.72
P C 0.74
V E 0.07
L E 0.15
V C 0.10
S C 0.72
P C 0.28
S C 0.04
K H 0.46
R H 0.43
Q H 0.25
R H 0.29
V C 0.25
A C 0.61
R C 0.97
END

