
PFRMAT AL
TARGET T0118
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1a76
Y   4    Y 225
G   5    N 226
A   6    P 227
K   7    G 228
G   8    G 229
I   9    V 230
R  10    K 231
K  11    G 232
V  12    I 233
G  13    G 234
F  15    F 235
R  16    K 236
S  17    R 237
G  18    A 238
L  19    Y 239
E  20    E 240
D  21    S 244
K  22    G 245
V  23    V 246
S  24    A 247
K  25    K 248
Q  26    D 249
L  27    V 250
E  28    L 251
S  29    K 252
K  30    K 253
G  31    E 254
I  32    V 255
K  33    E 256
F  34    Y 257
Y  36    Y 258
E  37    D 259
E  38    E 260
W  39    I 261
K  40    K 262
V  41    R 263
P  42    I 264
Y  43    F 265
V  44    K 266
I  45    E 267
P  46    P 268
A  47    K 269
S  48    V 270
N  49    T 271
H  50    D 272
T  51    N 273
Y  52    Y 274
T  53    S 275
P  54    L 276
D  55    S 277
F  56    L 278
L  57    K 279
L  58    L 280
P  59    P 281
N  60    D 282
G  61    G 285
I  62    I 286
F  63    F 289
V  64    L 290
E  65    V 291
T  66    D 292
K  67    E 293
G  68    N 294
L  69    D 295
W  70    F 296
E  71    N 297
S  72    Y 298
D  73    D 299
D  74    R 300
R  75    V 301
K  76    K 302
K  77    K 303
H  78    H 304
L  79    V 305
TER
END


