
PFRMAT SS
TARGET T0119
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0119-1-100.t2k.a2m.gz for positions 1-100 and
METHOD alignment T0119-101-end.t2k.a2m.gz for positions 101-end
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for first half of alignment was 170.611
METHOD Total sequence weight for second half of alignment was 295.985
METHOD
MODEL 1
M E 0.575
S E 0.679
N E 0.752
H E 0.724
Q E 0.780
V E 0.839
A E 0.894
L E 0.938
Q E 0.956
F E 0.926
E E 0.815
D C 0.580
G C 0.903
V C 0.931
T C 0.720
R E 0.800
F E 0.953
I E 0.988
C E 0.977
I E 0.872
A C 0.714
Q C 0.948
G C 0.858
E C 0.529
T C 0.382
L H 0.953
S H 0.966
D H 0.983
A H 0.970
A H 0.974
Y H 0.966
R H 0.942
Q H 0.801
Q C 0.968
I C 0.957
N C 0.847
I C 0.551
P C 0.578
M C 0.551
D C 0.537
C C 0.646
R C 0.786
E C 0.784
G C 0.799
E C 0.622
C C 0.563
G E 0.574
T E 0.673
C E 0.736
R E 0.877
A E 0.946
F E 0.964
C E 0.924
E E 0.741
S E 0.498
G C 0.665
N C 0.559
Y C 0.502
D C 0.604
M C 0.698
P C 0.806
E C 0.766
D C 0.716
N C 0.683
Y C 0.661
I H 0.545
E H 0.590
D H 0.511
A C 0.682
L C 0.851
T C 0.950
P H 0.874
E H 0.863
E H 0.877
A H 0.749
Q H 0.649
Q C 0.623
G C 0.975
Y C 0.688
V E 0.765
L E 0.946
A E 0.969
C E 0.925
Q E 0.920
C E 0.892
R E 0.866
P E 0.731
T C 0.603
S C 0.763
D C 0.744
A E 0.830
V E 0.968
F E 0.988
Q E 0.982
I E 0.867
Q C 0.563
A C 0.886
S C 0.891
S C 0.874
E C 0.972
V E 0.481
C E 0.494
K C 0.540
T C 0.725
K C 0.725
I C 0.674
H C 0.643
H C 0.538
F E 0.534
E E 0.678
G E 0.893
T E 0.962
L E 0.979
A E 0.967
R E 0.906
V E 0.828
E E 0.789
N E 0.739
L C 0.530
S C 0.814
D C 0.904
S C 0.769
T E 0.774
I E 0.902
T E 0.986
F E 0.994
D E 0.989
I E 0.947
Q E 0.577
L C 0.756
D C 0.935
D C 0.942
G C 0.862
Q C 0.795
P C 0.704
D C 0.679
I C 0.723
H C 0.850
F C 0.761
L C 0.844
A C 0.792
G C 0.738
Q E 0.550
Y E 0.871
V E 0.957
N E 0.969
V E 0.958
T E 0.850
L E 0.518
P C 0.857
G C 0.939
T C 0.842
T C 0.729
E C 0.580
T C 0.544
R C 0.586
S E 0.490
Y E 0.682
S E 0.715
F E 0.485
S C 0.671
S C 0.677
Q C 0.698
P C 0.820
G C 0.905
N C 0.939
R C 0.936
L E 0.617
T E 0.955
G E 0.991
F E 0.998
V E 0.999
V E 0.997
R E 0.988
N E 0.935
V E 0.503
P C 0.877
Q C 0.916
G C 0.891
K C 0.601
M H 0.775
S H 0.858
E H 0.962
Y H 0.956
L H 0.952
S H 0.931
V H 0.869
Q H 0.768
A C 0.586
K C 0.839
A C 0.793
G C 0.941
D C 0.661
K E 0.680
M E 0.882
S E 0.912
F E 0.879
T E 0.755
G C 0.504
P C 0.723
F C 0.802
G C 0.805
S C 0.743
F C 0.584
Y C 0.490
L C 0.577
R C 0.742
D C 0.877
V C 0.919
K C 0.928
R C 0.841
P C 0.636
V E 0.911
L E 0.984
M E 0.993
L E 0.972
A E 0.779
G C 0.702
G C 0.866
T C 0.745
G C 0.562
I H 0.595
A H 0.823
P H 0.948
F H 0.980
L H 0.993
S H 0.995
M H 0.996
L H 0.990
Q H 0.988
V H 0.968
L H 0.905
E H 0.829
Q H 0.532
K C 0.833
G C 0.923
S C 0.898
E C 0.873
H C 0.799
P E 0.529
V E 0.901
R E 0.976
L E 0.991
V E 0.990
F E 0.962
G E 0.807
V C 0.516
T C 0.766
Q C 0.911
D H 0.611
C H 0.685
D H 0.799
L H 0.819
V H 0.804
A H 0.823
L H 0.974
E H 0.981
Q H 0.983
L H 0.973
D H 0.970
A H 0.956
L H 0.937
Q H 0.919
Q H 0.886
K H 0.782
L C 0.959
P C 0.929
W C 0.863
F E 0.612
E E 0.910
Y E 0.978
R E 0.986
T E 0.985
V E 0.977
V E 0.919
A E 0.654
H C 0.733
A C 0.913
E C 0.931
S C 0.944
Q C 0.887
H C 0.874
E C 0.851
R C 0.773
K C 0.611
G E 0.545
Y E 0.603
V H 0.521
T H 0.705
G H 0.896
H H 0.909
I H 0.918
E H 0.901
Y H 0.839
D H 0.748
W H 0.598
L C 0.653
N C 0.895
G C 0.924
G C 0.934
E C 0.903
V C 0.626
D E 0.805
V E 0.974
Y E 0.984
L E 0.960
C E 0.749
G C 0.743
P C 0.923
V H 0.559
P H 0.781
M H 0.932
V H 0.953
E H 0.976
A H 0.983
V H 0.988
R H 0.989
S H 0.989
W H 0.982
L H 0.975
D H 0.967
T H 0.952
Q H 0.878
G C 0.942
I C 0.926
Q C 0.935
P C 0.630
A C 0.613
N C 0.479
F E 0.549
L E 0.733
F E 0.754
E E 0.597
K E 0.567
F C 0.562
S C 0.832
A C 0.918
N C 0.962
END

