
PFRMAT SS
TARGET T0119
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.96
S C 0.19
N E 0.14
H E 0.74
Q E 0.78
V E 0.95
A E 0.98
L E 0.95
Q E 0.92
F E 0.61
E C 0.78
D C 0.94
G C 0.95
V C 0.84
T E 0.71
R E 0.91
F E 0.90
I E 0.94
C E 0.89
I E 0.60
A C 0.90
Q C 0.90
G C 0.86
E C 0.91
T C 0.13
L H 0.83
S H 0.90
D H 0.91
A H 0.91
A H 0.91
Y H 0.90
R H 0.71
Q C 0.84
Q C 0.97
I C 0.92
N C 0.78
I C 0.60
P C 0.65
M C 0.57
D C 0.42
C C 0.71
R C 0.81
E C 0.86
G C 0.88
E C 0.80
C C 0.74
G C 0.22
T C 0.53
C C 0.59
R E 0.82
A E 0.89
F E 0.92
C E 0.87
E E 0.84
S E 0.79
G C 0.82
N C 0.69
Y C 0.51
D C 0.35
M C 0.74
P C 0.71
E C 0.59
D C 0.31
N C 0.17
Y C 0.24
I C 0.25
E C 0.44
D C 0.52
A C 0.63
L C 0.88
T C 0.90
P H 0.86
E H 0.79
E H 0.92
A H 0.93
Q H 0.50
Q C 0.52
G C 0.93
Y C 0.44
V E 0.77
L E 0.69
A E 0.51
C E 0.47
Q E 0.54
C E 0.10
R C 0.09
P C 0.51
T C 0.77
S C 0.73
D C 0.26
A E 0.01
V E 0.10
F H 0.08
Q H 0.01
I C 0.16
Q C 0.28
A C 0.21
S C 0.06
S H 0.05
E H 0.06
V H 0.03
C C 0.01
K C 0.21
T C 0.53
K C 0.39
I C 0.54
H C 0.65
H C 0.37
F E 0.16
E E 0.44
G E 0.83
T E 0.93
L E 0.95
A E 0.95
R E 0.94
V E 0.92
E E 0.88
N E 0.39
L C 0.35
S C 0.92
D C 0.91
S C 0.81
T E 0.23
I E 0.92
T E 0.94
F E 0.94
D E 0.95
I E 0.94
Q E 0.87
L C 0.13
D C 0.85
D C 0.89
G C 0.81
Q C 0.71
P C 0.74
D C 0.71
I C 0.84
H C 0.83
F C 0.70
L C 0.92
A C 0.87
G C 0.80
Q C 0.45
Y E 0.70
V E 0.91
N E 0.94
V E 0.96
T E 0.95
L E 0.71
P C 0.89
G C 0.94
T C 0.63
T C 0.50
E C 0.59
T E 0.13
R E 0.58
S E 0.23
Y E 0.23
S C 0.22
F C 0.31
S C 0.48
S C 0.61
Q C 0.87
P C 0.91
G C 0.87
N C 0.93
R C 0.86
L E 0.43
T E 0.83
G E 0.94
F E 0.95
V E 0.95
V E 0.95
R E 0.95
N E 0.90
V E 0.36
P C 0.68
Q C 0.90
G C 0.88
K C 0.25
M C 0.14
S C 0.51
E H 0.85
Y H 0.82
L H 0.81
S H 0.90
V H 0.51
Q C 0.22
A C 0.86
K C 0.93
A C 0.93
G C 0.93
D C 0.76
K E 0.81
M E 0.92
S E 0.94
F E 0.95
T E 0.92
G E 0.31
P C 0.54
F C 0.43
G C 0.33
S E 0.36
F E 0.46
Y E 0.71
L E 0.64
R C 0.41
D C 0.80
V C 0.93
K C 0.94
R C 0.78
P E 0.23
V E 0.83
L E 0.92
M E 0.94
L E 0.87
A E 0.67
G C 0.63
G C 0.70
T C 0.11
G C 0.43
I H 0.45
A H 0.60
P H 0.67
F H 0.93
L H 0.95
S H 0.95
M H 0.96
L H 0.96
Q H 0.96
V H 0.96
L H 0.94
E H 0.92
Q H 0.68
K C 0.73
G C 0.94
S C 0.95
E C 0.87
H C 0.87
P C 0.19
V E 0.73
R E 0.93
L E 0.94
V E 0.94
F E 0.93
G E 0.72
V E 0.61
T C 0.87
Q C 0.95
D H 0.90
C H 0.87
D H 0.86
L H 0.10
V H 0.28
A H 0.46
L H 0.93
E H 0.92
Q H 0.93
L H 0.94
D H 0.96
A H 0.95
L H 0.97
Q H 0.95
Q H 0.93
K H 0.75
L C 0.66
P C 0.94
W C 0.90
F E 0.23
E E 0.85
Y E 0.95
R E 0.95
T E 0.96
V E 0.94
V E 0.92
A E 0.51
H C 0.67
A C 0.90
E C 0.89
S C 0.84
Q C 0.81
H C 0.84
E C 0.91
R C 0.74
K C 0.42
G C 0.87
Y C 0.80
V H 0.37
T H 0.74
G H 0.90
H H 0.90
I H 0.89
E H 0.89
Y H 0.89
D H 0.53
W C 0.07
L C 0.93
N C 0.94
G C 0.76
G C 0.68
E C 0.83
V C 0.82
D E 0.83
V E 0.85
Y E 0.94
L E 0.86
C E 0.76
G C 0.89
P C 0.94
V H 0.93
P H 0.91
M H 0.94
V H 0.95
E H 0.93
A H 0.96
V H 0.96
R H 0.96
S H 0.96
W H 0.96
L H 0.93
D H 0.90
T H 0.76
Q C 0.57
G C 0.97
I C 0.92
Q C 0.94
P H 0.89
A H 0.90
N H 0.85
F E 0.61
L E 0.61
F E 0.64
E E 0.59
K E 0.34
F E 0.56
S C 0.48
A C 0.79
N C 0.97
END

