
PFRMAT AL
TARGET T0121
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
METHOD For this split domain, we have submitted the same alignment
METHOD (our top-ranking hit) for the homologous N-terminal domain
METHOD for all 5 models, while varying the C-terminal domain. Models
METHOD 1-5 correspond to ranks 1-5 for T0121_2, whilst all having the
METHOD same alignment (rank 1) for T0121_1.
MODEL 5
PARENT 1b0u_A
A    2 N 5
G    3 K 6
V    4 L 7
R    5 H 8
L    6 V 9
V    7 I 10
D    8 D 11
V    9 L 12
W   10 H 13
K   11 K 14
V   12 R 15
F   13 Y 16
G   14 G 17
E   15 G 18
V   16 H 19
T   17 E 20
A   18 V 21
V   19 L 22
R   20 K 23
E   21 G 24
L   22 V 25
S   23 S 26
L   24 L 27
E   25 Q 28
V   26 A 29
K   27 R 30
D   28 A 31
G   29 G 32
E   30 D 33
F   31 V 34
M   32 I 35
I   33 S 36
L   34 I 37
L   35 I 38
G   36 G 39
P   37 S 40
S   38 S 41
G   39 G 42
C   40 S 43
G   41 G 44
K   42 K 45
T   43 S 46
T   44 T 47
T   45 F 48
L   46 L 49
R   47 R 50
M   48 C 51
I   49 I 52
A   50 N 53
G   51 F 54
L   52 L 55
E   53 E 56
E   54 K 57
P   55 P 58
S   56 S 59
R   57 E 60
G   58 G 61
Q   59 A 62
I   60 I 63
Y   61 I 64
I   62 V 65
G   63 N 66
D   64 G 67
R   65 Q 68
L   66 N 69
V   67 I 70
A   68 N 71
D   69 K 81
P   70 V 82
E   71 A 83
K   72 D 84
G   73 K 85
I   74 N 86
F   75 Q 87
V   76 L 88
P   77 R 89
P   78 L 90
K   79 L 91
D   80 R 92
R   81 T 93
D   82 R 94
I   83 L 95
A   84 T 96
M   85 M 97
V   86 V 98
F   87 F 99
Q   88 Q 100
S   89 H 101
Y   90 F 102
A   91 N 103
L   92 L 104
Y   93 W 105
P   94 S 106
H   95 H 107
M   96 M 108
T   97 T 109
V   98 V 110
Y   99 L 111
D  100 E 112
N  101 N 113
I  102 V 114
A  103 M 115
F  104 E 116
P  105 P 118
L  106 I 119
K  107 Q 120
L  108 V 121
R  109 L 122
K  110 G 123
V  111 L 124
P  112 S 125
R  113 K 126
Q  114 H 127
E  115 D 128
I  116 A 129
D  117 R 130
Q  118 E 131
R  119 R 132
V  120 A 133
R  121 L 134
E  122 K 135
V  123 Y 136
A  124 L 137
E  125 A 138
L  126 K 139
L  127 V 140
G  128 G 141
L  129 I 142
T  130 D 143
E  131 E 144
L  132 R 145
L  133 A 146
N  134 G 148
R  135 K 149
K  136 Y 150
P  137 P 151
R  138 V 152
E  139 H 153
L  140 L 154
S  141 S 155
G  142 G 156
G  143 G 157
Q  144 Q 158
R  145 Q 159
Q  146 Q 160
R  147 R 161
V  148 V 162
A  149 S 163
L  150 I 164
G  151 A 165
R  152 R 166
A  153 A 167
I  154 L 168
V  155 A 169
R  156 M 170
K  157 E 171
P  158 P 172
Q  159 D 173
V  160 V 174
F  161 L 175
L  162 L 176
M  163 F 177
D  164 D 178
E  165 E 179
P  166 P 180
L  167 T 181
S  168 S 182
N  169 A 183
L  170 L 184
D  171 D 185
A  172 P 186
K  173 E 187
L  174 L 188
R  175 V 189
V  176 G 190
R  177 E 191
M  178 V 192
R  179 L 193
A  180 R 194
E  181 I 195
L  182 M 196
K  183 Q 197
K  184 Q 198
L  185 L 199
Q  186 A 200
R  187 E 201
Q  188 E 202
G  190 G 203
V  191 K 204
T  192 T 205
T  193 M 206
I  194 V 207
Y  195 V 208
V  196 V 209
T  197 T 210
H  198 H 211
D  199 E 212
Q  200 M 213
V  201 G 214
E  202 F 215
A  203 A 216
M  204 R 217
T  205 H 218
M  206 V 219
G  207 S 220
D  208 S 221
R  209 H 222
I  210 V 223
A  211 I 224
V  212 F 225
M  213 L 226
N  214 H 227
R  215 Q 228
G  216 G 229
V  217 K 230
L  218 I 231
Q  219 E 232
Q  220 E 233
V  221 E 234
G  222 G 235
S  223 D 236
P  224 P 237
D  225 E 238
E  226 Q 239
V  227 V 240
Y  228 F 241
D  229 G 242
K  230 N 243
P  231 P 244
A  232 Q 245
N  233 S 246
T  234 P 247
F  235 R 248
V  236 L 249
A  237 Q 250
G  238 Q 251
F  239 F 252
TER
END
PARENT 1cqx_A
Y   279 W 151
V   280 K 152
G   281 G 153
R   282 R 155
E   283 T 156
V   284 F 157
I   285 V 158
F   286 I 159
G   287 R 160
I   288 K 162
R   289 R 163
P   290 P 164
E   291 E 165
D   292 D 167
L   293 V 168
Y   294 A 177
D   295 D 178
A   296 G 179
M   297 G 180
F   298 P 181
A   299 V 182
R   300 V 183
V   301 N 184
R   302 F 185
V   303 E 186
P   304 P 187
G   305 G 188
L   308 Q 189
V   309 Y 190
R   310 T 191
A   311 S 192
V   312 V 193
V   313 A 194
E   314 I 195
I   315 D 196
V   316 V 197
E   317 P 198
N   318 A 199
L   319 L 200
G   320 G 201
S   321 L 202
E   322 Q 203
R   323 Q 204
I   324 I 205
V   325 R 206
H   326 Q 207
L   327 Y 208
R   328 S 209
V   329 L 210
G   330 S 211
G   331 D 212
V   332 M 213
T   333 R 220
F   334 I 221
V   335 S 222
G   336 V 223
A   337 K 224
F   338 R 225
R  339 E 226
S  340 G 227
E  341 G 228
S  342 G 229
R  343 P 230
V  344 V 244
R  345 N 245
E  346 V 246
G  347 G 247
V  348 D 248
E  349 Q 249
V  350 V 250
D  351 K 251
V  352 L 252
V  353 A 253
F  354 A 254
D  355 P 255
M  356 Y 256
K  357 G 257
K  358 S 258
I  359 F 259
H  360 H 260
I  361 I 261
TER
END

