
PFRMAT AL
TARGET T0121
AUTHOR 6305-9733-7289
REMARK similar to 1b0u.
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 1b0u (chain A) was identified as a
METHOD homologue. All sequences hit with an E-val of less than 0.0005
METHOD were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990)
METHOD and one sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0121 and 1b0u_A, and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402,1996.) The alignment between t0121
METHOD and 1b0u_A was extracted, and then edited by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
MODEL  1
PARENT 1b0u_A
V 4 L A7
R 5 H A8
L 6 V A9
V 7 I A10
D 8 D A11
V 9 L A12
W 10 H A13
K 11 K A14
V 12 R A15
F 13 Y A16
G 14 G A17
E 15 G A18
V 16 H A19
T 17 E A20
A 18 V A21
V 19 L A22
R 20 K A23
E 21 G A24
L 22 V A25
S 23 S A26
L 24 L A27
E 25 Q A28
V 26 A A29
K 27 R A30
D 28 A A31
G 29 G A32
E 30 D A33
F 31 V A34
M 32 I A35
I 33 S A36
L 34 I A37
L 35 I A38
G 36 G A39
P 37 S A40
S 38 S A41
G 39 G A42
C 40 S A43
G 41 G A44
K 42 K A45
T 43 S A46
T 44 T A47
T 45 F A48
L 46 L A49
R 47 R A50
M 48 C A51
I 49 I A52
A 50 N A53
G 51 F A54
L 52 L A55
E 53 E A56
E 54 K A57
P 55 P A58
S 56 S A59
R 57 E A60
G 58 G A61
Q 59 A A62
I 60 I A63
Y 61 I A64
I 62 V A65
G 63 N A66
L 66 L A72
V 67 V A73
A 68 R A74
I 74 L A80
F 75 K A81
V 76 V A82
D 82 R A94
I 83 L A95
A 84 T A96
M 85 M A97
V 86 V A98
F 87 F A99
Q 88 Q A100
S 89 H A101
Y 90 F A102
A 91 N A103
L 92 L A104
Y 93 W A105
P 94 S A106
H 95 H A107
M 96 M A108
T 97 T A109
V 98 V A110
Y 99 L A111
D 100 E A112
N 101 N A113
I 102 V A114
A 103 M A115
F 104 E A116
P 105 A A117
L 106 P A118
K 107 I A119
L 108 Q A120
R 113 K A126
Q 114 H A127
E 115 D A128
I 116 A A129
D 117 R A130
Q 118 E A131
R 119 R A132
V 120 A A133
R 121 L A134
E 122 K A135
V 123 Y A136
A 124 L A137
E 125 A A138
L 126 K A139
L 127 V A140
G 128 G A141
L 129 I A142
T 130 D A143
L 133 Q A147
N 134 G A148
R 135 K A149
K 136 Y A150
P 137 P A151
R 138 V A152
E 139 H A153
L 140 L A154
S 141 S A155
G 142 G A156
G 143 G A157
Q 144 Q A158
R 145 Q A159
Q 146 Q A160
R 147 R A161
V 148 V A162
A 149 S A163
L 150 I A164
G 151 A A165
R 152 R A166
A 153 A A167
I 154 L A168
V 155 A A169
R 156 M A170
K 157 E A171
P 158 P A172
Q 159 D A173
V 160 V A174
F 161 L A175
L 162 L A176
M 163 F A177
D 164 D A178
E 165 E A179
P 166 P A180
L 167 T A181
S 168 S A182
N 169 A A183
L 170 L A184
D 171 D A185
A 172 P A186
K 173 E A187
L 174 L A188
R 175 V A189
V 176 G A190
R 177 E A191
M 178 V A192
R 179 L A193
A 180 R A194
E 181 I A195
L 182 M A196
K 183 Q A197
K 184 Q A198
L 185 L A199
V 191 K A204
T 192 T A205
T 193 M A206
I 194 V A207
Y 195 V A208
V 196 V A209
T 197 T A210
H 198 H A211
D 199 E A212
Q 200 M A213
V 201 G A214
E 202 F A215
A 203 A A216
M 204 R A217
T 205 H A218
M 206 V A219
G 207 S A220
D 208 S A221
R 209 H A222
I 210 V A223
A 211 I A224
V 212 F A225
M 213 L A226
N 214 H A227
R 215 Q A228
G 216 G A229
V 217 K A230
L 218 I A231
Q 219 E A232
Q 220 E A233
V 221 E A234
G 222 G A235
S 223 D A236
P 224 P A237
D 225 E A238
E 226 Q A239
V 227 V A240
Y 228 F A241
D 229 G A242
K 230 N A243
P 231 P A244
A 232 Q A245
N 233 S A246
T 234 P A247
F 235 R A248
V 236 L A249
A 237 Q A250
G 238 Q A251
F 239 F A252
I 240 L A253
G 241 K A254
S 242 S A256
P 243 L A257
P 244 K A258
TER
END


