
PFRMAT AL
TARGET T0121
AUTHOR 5505-7671-7042
REMARK model for C-term region of T0121
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1qez_A
L 268    N 1008
P 269    A 1009
D 270    P 1010
Q 271    D 1011
F 272    V 1012
E 273    V 1013
V 274    N 1014
L 275    V 1015
G 276    L 1016
E 277    V 1017
L 278    E 1018
G 279    I 1019
Y 280    P 1020
V 281    Q 1021
G 282    G 1022
R 283    S 1023
R 290    N 1024
P 291    I 1025
E 292    K 1026
D 293    Y 1027
L 294    E 1028
Y 295    Y 1029
D 296    D 1030
A 297    D 1031
R 301    E 1032
V 302    E 1033
R 303    G 1034
V 304    V 1035
P 305    I 1036
G 306    K 1037
E 307    V 1038
N 308    D 1039
L 309    R 1040
A 312    V 1041
V 313    S 1045
V 314    M 1046
E 315    N 1047
I 316    Y 1048
V 317    P 1049
E 318    F 1050
N 319    N 1051
L 320    Y 1052
G 321    G 1053
E 323    F 1054
R 324    I 1055
I 325    P 1056
V 326    G 1057
H 327    T 1058
L 328    L 1059
R 329    E 1060
V 330    E 1061
G 331    D 1062
G 332    G 1063
V 333    D 1064
T 334    P 1065
F 335    L 1066
V 336    D 1067
G 337    V 1068
A 338    L 1069
F 339    V 1070
R 340    I 1071
S 341    T 1072
E 342    N 1073
S 343    Y 1074
R 344    Q 1075
V 345    L 1076
R 346    Y 1077
E 347    P 1078
G 348    G 1079
V 349    S 1080
E 350    V 1081
V 351    I 1082
D 352    E 1083
F 355    V 1084
D 356    R 1085
M 357    P 1086
K 358    I 1087
K 359    G 1088
I 360    I 1089
H 361    L 1090
I 362    Y 1091
F 363    M 1092
D 364    K 1093
K 365    D 1094
T 366    E 1095
T 367    E 1096
G 368    G 1097
K 369    E 1098
A 370    D 1099
I 371    A 1100
TER
END


