
PFRMAT AL
TARGET T0121
AUTHOR 5505-7671-7042
REMARK model for C-term region of T0121
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1agj_A
E 292    G 183
D 293    L 184
L 294    R 185
Y 295    Y 186
D 296    Y 187
R 301    G 188
V 302    F 189
R 303    T 190
V 304    V 191
P 305    P 192
G 306    G 193
E 307    N 194
N 308    S 195
L 309    G 196
V 310    S 197
R 311    G 198
A 312    I 199
N 319    N 201
L 320    S 202
G 321    N 203
S 322    G 204
E 323    E 205
R 324    L 206
I 325    V 207
V 326    G 208
H 327    I 209
L 328    H 210
R 329    S 211
V 330    S 212
G 331    K 213
G 332    V 214
V 333    S 215
T 334    H 216
F 335    L 217
V 336    D 218
G 337    R 219
A 338    E 220
F 339    H 221
R 340    Q 222
S 341    I 223
E 342    N 224
S 343    Y 225
R 344    G 226
V 345    V 227
R 346    G 228
E 347    I 229
G 348    G 230
V 349    N 231
E 350    Y 232
V 351    V 233
D 352    K 234
V 353    R 235
V 354    I 236
F 355    I 237
D 356    N 238
M 357    E 239
TER
END


