
PFRMAT AL
TARGET T0121
AUTHOR 5477-6509-1337
REMARK
REMARK   Work performed by Kai-Ming Ho, James R. Morris, Cai-Zhuang Wang,
REMARK                   Drena Dobbs, Tzu-Liang Chan, Young-Ok Im,
REMARK                   Josh Koch, Neil Voss, Dion Harmon
REMARK
REMARK   Acknowledgments to Amy Andreotti and Josh Lapan
REMARK
REMARK   Work supported by Pioneer Hi-Bred, by a Carver Foundation grant
REMARK     from Iowa State University, and a Laboratory Directed 
REMARK     Research and Development grant from Ames Laboratory, U.S.D.O.E.
REMARK
REMARK
METHOD  This prediction is based upon structural recognition, based upon
METHOD  counting the number of hydrophobic contacts and on scoring the 
METHOD  energy with a modified Miyazawa-Jernigan matrix.  The structural
METHOD  threading used here included an iterated, exhaustive search for
METHOD  single insertion or deletion regions.  Residues 1-240 and 241-372
METHOD  were treated separately, based upon the information provided.
METHOD
MODEL 1 
REMARK    Homology model for             t0121b-1           t0121b-1
REMARK  program BUILD-AL by James R. Morris, Ames Lab    8/29/2000
REMARK
REMARK  Building a structure using the PDB file 1jul.pdb.
REMARK  Target sequence taken from file t0121b-1.
REMARK  Using an offset of 1
PARENT 1jul
M  1    R   3
A  2    Y   4
G  3    L   5
V  4    K   6
R  5    G   7
L  6    W   8
V  7    L   9
D  8    K   10
V  9    D   11
W  10    V   12
K  11    V   13
V  12    Q   14
F  13    L   15
G  14    S   16
E  15    L   17
V  16    R   18
T  17    R   19
A  18    P   20
V  19    S   21
R  20    F   22
E  21    R   23
L  22    A   24
S  23    S   25
L  24    R   26
E  25    Q   27
V  26    R   28
K  27    P   29
D  28    I   30
G  29    I   31
E  30    S   32
F  31    L   33
M  32    N   34
I  33    E   35
L  34    R   36
L  35    I   37
G  36    L   38
P  37    E   39
S  38    F   40
G  39    N   41
C  40    K   42
G  41    R   43
K  42    N   44
T  43    I   45
T  44    T   46
T  45    A   47
L  46    I   48
R  47    I   49
M  48    A   50
I  49    E   51
A  50    Y   52
G  51    K   53
L  52    R   54
E  53    K   55
E  54    S   56
P  55    P   57
S  56    S   58
R  57    G   59
G  58    L   60
Q  59    D   61
I  60    V   62
Y  61    E   63
I  62    R   64
G  63    D   65
D  64    P   66
R  65    I   67
L  66    E   68
V  67    Y   69
A  68    S   70
D  69    K   71
P  70    F   72
E  71    M   73
K  72    E   74
G  73    R   75
I  74    Y   76
F  75    A   77
V  76    V   78
P  77    G   79
P  78    L   80
K  79    S   81
D  80    I   82
R  81    L   83
D  82    T   84
I  83    E   85
A  84    E   86
M  85    K   87
V  86    Y   88
F  87    F   89
Q  88    N   90
S  89    G   91
Y  90    S   92
A  91    Y   93
L  92    E   94
Y  93    T   95
P  94    L   96
H  95    R   97
M  96    K   98
T  97    I   99
V  98    A   100
Y  99    S   101
D  100    S   102
N  101    V   103
I  102    S   104
A  103    I   105
F  104    P   106
P  105    I   107
L  106    L   108
K  107    M   109
L  108    K   110
R  109    D   111
K  110    F   112
V  111    I   113
P  112    V   114
R  113    K   115
Q  114    E   116
E  115    S   117
I  116    Q   118
D  117    I   119
Q  118    D   120
R  119    D   121
V  120    A   122
R  121    Y   123
E  122    N   124
V  123    L   125
A  124    G   126
E  125    A   127
L  126    D   128
L  127    T   129
G  128    V   130
L  129    L   131
T  130    L   132
E  131    I   133
L  132    V   134
L  133    K   135
N  134    I   136
R  135    L   137
K  136    T   138
P  137    E   139
R  138    R   140
E  139    E   141
L  140    L   142
S  141    E   143
G  142    S   144
G  143    L   145
Q  144    L   146
R  145    E   147
Q  146    Y   148
R  147    A   149
V  148    R   150
A  149    S   151
L  150    Y   152
G  151    G   153
R  152    M   154
A  153    E   155
I  154    P   156
V  155    L   157
R  156    I   158
K  157    E   159
P  158    I   160
Q  159    N   161
V  160    D   162
F  161    E   163
L  162    N   164
M  163    D   165
D  164    L   166
E  165    D   167
P  166    I   168
L  167    A   169
S  168    L   170
N  169    R   171
L  170    I   172
D  171    G   173
A  172    A   174
K  173    R   175
L  174    F   176
R  175    I   177
V  176    G   178
R  177    I   179
M  178    N   180
R  179    S   181
A  180    R   182
E  181    D   183
L  182    L   184
K  183    E   185
K  184    T   186
L  185    L   187
Q  186    E   188
R  187    I   189
Q  188    N   190
L  189    K   191
G  190    E   192
V  191    N   193
T  192    Q   194
T  193    R   195
I  194    K   196
Y  195    L   197
V  196    I   198
T  197    S   199
H  198    M   200
D  199    I   201
Q  200    N   204
V  201    V   205
E  202    V   206
A  203    K   207
M  204    V   208
T  205    A   209
M  206    E   210
G  207    S   211
D  208    G   212
R  209    I   213
I  210    S   214
A  211    E   215
V  212    R   216
M  213    N   217
N  214    E   218
R  215    I   219
G  216    E   220
V  217    E   221
L  218    L   222
Q  219    R   223
Q  220    K   224
V  221    L   225
G  222    G   226
S  223    V   227
P  224    N   228
D  225    A   229
E  226    F   230
V  227    L   231
Y  228    I   232
D  229    G   233
K  230    S   234
P  231    S   235
A  232    L   236
N  233    M   237
T  234    R   238
F  235    N   239
V  236    P   240
A  237    E   241
G  238    K   242
F  239    I   243
I  240    K   244
TER
REMARK    Homology model for             t0121a-1           t0121a-1
REMARK  program BUILD-AL by James R. Morris, Ames Lab    8/29/2000
REMARK
REMARK  Building a structure using the PDB file 1bk5.pdb.
REMARK  Target sequence taken from file t0121a-1.
REMARK  Using an offset of 200
PARENT 1bk5_A
G  241    Q  A289
S  242    E  A290
P  243    A  A291
P  244    I  A292
M  245    Q  A293
N  246    A  A294
F  247    V  A295
L  248    I  A296
D  249    D  A297
A  250    V  A298
I  251    R  A299
V  252    I  A300
T  253    P  A301
E  254    K  A302
D  255    R  A303
G  256    L  A304
F  257    V  A305
V  258    E  A306
D  259    L  A307
F  260    L  A308
G  261    S  A309
E  262    H  A310
F  263    E  A311
R  264    S  A312
L  265    T  A313
K  266    L  A314
L  267    V  A315
L  268    Q  A316
P  269    T  A317
D  270    P  A318
Q  271    A  A319
F  272    L  A320
E  273    R  A321
V  274    A  A322
L  275    V  A323
G  276    G  A324
E  277    N  A325
L  278    I  A326
G  279    V  A327
Y  280    T  A328
V  281    G  A329
G  282    N  A330
R  283    D  A331
E  284    L  A332
V  285    Q  A333
I  286    T  A334
F  287    Q  A335
G  288    V  A336
I  289    V  A337
R  290    I  A338
P  291    N  A339
E  292    A  A340
D  293    G  A341
L  294    V  A342
Y  295    L  A343
D  296    P  A344
A  297    A  A345
M  298    L  A346
F  299    R  A347
A  300    L  A348
R  301    L  A349
V  302    L  A350
R  303    S  A351
V  304    S  A352
P  305    P  A353
G  306    K  A354
E  307    E  A355
N  308    N  A356
L  309    I  A357
V  310    K  A358
R  311    K  A359
A  312    E  A360
V  313    A  A361
V  314    C  A362
E  315    W  A363
I  316    T  A364
V  317    I  A365
E  318    S  A366
N  319    N  A367
L  320    I  A368
G  321    T  A373
S  322    E  A374
E  323    Q  A375
R  324    I  A376
I  325    Q  A377
V  326    A  A378
H  327    V  A379
L  328    I  A380
R  329    D  A381
V  330    A  A382
G  331    N  A383
G  332    L  A384
V  333    I  A385
T  334    P  A386
F  335    P  A387
V  336    L  A388
G  337    V  A389
A  338    K  A390
F  339    L  A391
R  340    L  A392
S  341    E  A393
E  342    V  A394
S  343    A  A395
R  344    E  A396
V  345    Y  A397
R  346    K  A398
E  347    T  A399
G  348    K  A400
V  349    K  A401
E  350    E  A402
V  351    A  A403
D  352    C  A404
V  353    W  A405
V  354    A  A406
F  355    I  A407
D  356    S  A408
M  357    N  A409
K  358    A  A410
K  359    S  A411
I  360    S  A412
H  361    G  A413
I  362    G  A414
F  363    L  A415
D  364    Q  A416
K  365    R  A417
T  366    P  A418
T  367    D  A419
G  368    I  A420
K  369    I  A421
A  370    R  A422
I  371    Y  A423
F  372    L  A424
TER
END


