
PFRMAT AL
TARGET T0122
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 2tys_A
M    1 M 1
F    2 R 14
K    3 R 15
D    4 E 16
G    5 G 17
S    6 A 18
L    7 F 19
I    8 V 20
P    9 P 21
Y   10 F 22
L   11 V 23
T   12 T 24
A   13 L 25
G   14 G 26
D   15 D 27
P   16 P 28
D   17 G 29
K   18 I 30
Q   19 E 31
S   20 Q 32
T   21 S 33
L   22 L 34
N   23 K 35
F   24 I 36
L   25 I 37
L   26 D 38
A   27 T 39
L   28 L 40
D   29 D 42
E   30 A 43
Y   31 G 44
A   32 A 45
G   33 D 46
A   34 A 47
I   35 L 48
E   36 E 49
L   37 L 50
G   38 G 51
I   39 V 52
P   40 P 53
F   41 F 54
S   42 S 55
D   43 D 56
P   44 P 57
I   45 L 58
A   46 A 59
D   47 D 60
G   48 G 61
K   49 P 62
T   50 T 63
I   51 I 64
Q   52 Q 65
E   53 N 66
S   54 A 67
H   55 N 68
Y   56 L 69
R   57 R 70
A   58 A 71
L   59 F 72
K   60 A 73
N   61 A 74
G   62 G 75
F   63 V 76
K   64 T 77
L   65 P 78
R   66 A 79
E   67 Q 80
A   68 C 81
F   69 F 82
W   70 E 83
I   71 M 84
V   72 L 85
K   73 A 86
E   74 L 87
F   75 I 88
R   76 R 89
R   77 K 91
H   78 H 92
S   79 P 93
S   80 T 94
T   81 I 95
P   82 P 96
I   83 I 97
V   84 G 98
L   85 L 99
M   86 L 100
T   87 M 101
Y   88 Y 102
Y   89 A 103
N   90 N 104
P   91 L 105
I   92 V 106
Y   93 F 107
R   94 N 108
A   95 N 109
G   96 G 110
V   97 I 111
R   98 D 112
N   99 A 113
F  100 F 114
L  101 Y 115
A  102 A 116
E  103 R 117
A  104 C 118
K  105 E 119
A  106 Q 120
S  107 V 121
G  108 G 122
V  109 V 123
D  110 D 124
G  111 S 125
I  112 V 126
L  113 L 127
V  114 V 128
V  115 A 129
D  116 D 130
L  117 V 131
P  118 P 132
V  119 V 133
F  120 E 134
H  121 E 135
A  122 S 136
K  123 A 137
E  124 P 138
F  125 F 139
T  126 R 140
E  127 Q 141
I  128 A 142
A  129 A 143
R  130 L 144
E  131 R 145
E  132 H 146
G  133 N 147
I  134 I 148
K  135 A 149
T  136 P 150
V  137 I 151
F  138 F 152
L  139 I 153
A  140 C 154
A  141 P 155
P  142 P 156
N  143 N 157
T  144 A 158
P  145 D 159
D  146 D 160
E  147 D 161
R  148 L 162
L  149 L 163
K  150 R 164
V  151 Q 165
I  152 V 166
D  153 A 167
D  154 S 168
M  155 Y 169
T  156 G 170
T  157 R 171
G  158 G 172
F  159 Y 173
V  160 T 174
Y  161 Y 175
L  162 L 176
V  163 L 177
S  164 S 178
T  178 P 192
A  179 L 193
Y  180 H 194
D  181 H 195
L  182 L 196
L  183 I 197
R  184 E 198
R  185 K 199
A  186 L 200
K  187 K 201
R  188 E 202
I  189 Y 203
C  190 H 204
R  191 A 205
N  192 A 206
K  193 P 207
V  194 A 208
A  195 L 209
V  196 Q 210
G  197 G 211
F  198 F 212
G  199 G 213
V  200 I 214
S  201 S 215
K  202 S 216
R  203 P 217
E  204 E 218
H  205 Q 219
V  206 V 220
V  207 S 221
S  208 A 222
L  209 A 223
L  210 V 224
K  211 R 225
E  212 A 226
G  213 G 227
A  214 A 228
N  215 A 229
G  216 G 230
V  217 A 231
V  218 I 232
V  219 S 233
G  220 G 234
S  221 S 235
A  222 A 236
L  223 I 237
V  224 V 238
K  225 K 239
I  226 I 240
I  227 I 241
G  228 E 242
E  229 K 243
K  230 N 244
G  231 L 245
R  232 A 246
E  233 S 247
A  234 P 248
T  235 K 249
E  236 Q 250
F  237 M 251
L  238 L 252
K  239 A 253
K  240 E 254
K  241 A 261
V  242 M 262
E  243 K 263
E  244 A 264
L  245 A 265
L  246 S 266
G  247 R 267
I  248 A 268
TER
END

