
PFRMAT AL
TARGET T0122
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1rpx_A
M    1 F 6
F    2 S 7
K    3 K 8
D    4 S 9
G    5 D 10
S    6 I 11
L    7 V 13
I    8 S 14
P    9 P 15
Y   10 S 16
L   11 I 17
T   12 L 18
A   13 S 19
G   14 A 20
D   15 N 21
P   16 F 22
D   17 S 23
K   18 K 24
T   21 L 25
L   22 G 26
N   23 E 27
F   24 Q 28
L   25 V 29
L   26 K 30
A   27 A 31
L   28 I 32
D   29 E 33
E   30 Q 34
Y   31 G 36
A   32 C 37
G   33 D 38
A   34 W 39
I   35 I 40
E   36 H 41
L   37 V 42
G   38 D 43
I   45 V 44
A   46 M 45
D   47 D 46
G   48 G 47
K   49 R 48
T   50 F 49
I   51 V 50
F   63 P 51
K   64 N 52
L   65 I 53
R   66 T 54
E   67 I 55
A   68 G 56
F   69 P 57
W   70 L 58
I   71 V 59
V   72 V 60
K   73 D 61
E   74 S 62
F   75 L 63
R   76 R 64
R   77 P 65
H   78 I 66
S   79 T 67
S   80 D 68
T   81 L 69
P   82 P 70
I   83 L 71
V   84 V 73
L   85 H 74
M   86 L 75
T   87 M 76
Y   88 I 77
Y   89 V 78
N   90 E 79
P   91 P 80
R   98 D 81
N   99 Q 82
F  100 R 83
L  101 V 84
A  102 P 85
E  103 D 86
A  104 F 87
K  105 I 88
A  106 K 89
S  107 A 90
G  108 G 91
V  109 A 92
D  110 D 93
G  111 I 94
I  112 V 95
L  113 S 96
V  114 V 97
V  115 H 98
D  116 C 99
L  117 E 100
P  118 Q 101
V  119 S 102
F  120 S 103
H  121 T 104
A  122 I 105
K  123 H 108
E  124 R 109
F  125 T 110
T  126 I 111
E  127 N 112
I  128 Q 113
A  129 I 114
R  130 K 115
E  131 S 116
E  132 L 117
G  133 G 118
I  134 A 119
K  135 K 120
T  136 A 121
V  137 G 122
F  138 V 123
L  139 V 124
A  140 L 125
A  141 N 126
P  142 P 127
N  143 G 128
T  144 T 129
P  145 P 130
D  146 L 131
E  147 T 132
R  148 A 133
L  149 I 134
K  150 E 135
V  151 Y 136
I  152 V 137
D  153 L 138
D  154 D 139
T  156 A 140
T  157 V 141
G  158 D 142
F  159 L 143
V  160 V 144
Y  161 L 145
L  162 I 146
V  163 M 147
S  164 S 148
L  165 V 149
Y  166 N 150
G  167 P 151
T  168 G 152
T  169 F 153
G  170 G 154
A  171 G 155
R  172 Q 156
E  173 S 157
E  174 F 158
I  175 I 159
P  176 E 160
K  177 K 164
T  178 K 165
A  179 I 166
Y  180 S 167
D  181 D 168
L  182 L 169
L  183 R 170
R  184 K 171
R  185 I 172
A  186 C 173
K  187 A 174
R  188 E 175
I  189 R 176
C  190 G 177
R  191 L 178
N  192 N 179
K  193 P 180
V  194 I 182
A  195 E 183
V  196 V 184
G  197 D 185
F  198 G 186
G  199 G 187
V  200 V 188
S  201 G 189
K  202 P 190
E  204 K 191
H  205 N 192
V  206 A 193
V  207 Y 194
S  208 K 195
L  209 V 196
L  210 I 197
K  211 E 198
E  212 A 199
G  213 G 200
A  214 A 201
N  215 N 202
G  216 A 203
V  217 L 204
V  218 V 205
V  219 A 206
G  220 G 207
S  221 S 208
A  222 A 209
L  223 V 210
V  224 F 211
K  225 G 212
G  228 A 213
E  229 P 214
K  230 D 215
G  231 Y 216
R  232 A 217
E  233 E 218
A  234 A 219
T  235 I 220
E  236 K 221
F  237 G 222
L  238 I 223
K  239 K 224
K  240 T 225
K  241 S 226
V  242 K 227
E  243 R 228
E  244 E 230
TER
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