
PFRMAT AL
TARGET T0122
AUTHOR 6305-9733-7289
REMARK similar to 1c8v.
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 1c8v (chain A) was identified as a
METHOD homologue. All sequences hit with an E-val of less than 0.0005
METHOD were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990)
METHOD and one sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0122 and 1c8v_A, and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402,1996.) The alignment between t0122
METHOD and 1c8v_A was extracted, and then edited by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
MODEL  1
PARENT 1c8v_A
G 5 G A17
S 6 A A18
L 7 F A19
I 8 V A20
P 9 P A21
Y 10 F A22
L 11 V A23
T 12 T A24
A 13 L A25
G 14 G A26
D 15 D A27
P 16 P A28
D 17 G A29
K 18 I A30
Q 19 E A31
S 20 Q A32
T 21 S A33
L 22 L A34
N 23 K A35
F 24 I A36
L 25 I A37
L 26 D A38
A 27 T A39
L 28 L A40
D 29 I A41
E 30 D A42
A 34 A A47
I 35 L A48
E 36 E A49
L 37 L A50
G 38 G A51
I 39 V A52
P 40 P A53
F 41 F A54
S 42 S A55
D 43 D A56
P 44 P A57
I 45 L A58
A 46 A A59
D 47 D A60
G 48 G A61
K 49 P A62
T 50 T A63
I 51 I A64
Q 52 Q A65
E 53 N A66
S 54 A A67
H 55 N A68
Y 56 L A69
R 57 R A70
A 58 A A71
L 59 F A72
K 60 A A73
N 61 A A74
G 62 G A75
F 63 V A76
K 64 T A77
L 65 P A78
R 66 A A79
E 67 Q A80
A 68 C A81
F 69 F A82
W 70 E A83
I 71 M A84
V 72 L A85
K 73 A A86
E 74 L A87
F 75 I A88
R 76 R A89
R 77 E A90
H 78 K A91
S 79 H A92
I 83 I A97
V 84 G A98
L 85 L A99
M 86 L A100
T 87 M A101
Y 88 Y A102
Y 89 A A103
N 90 N A104
P 91 L A105
I 92 V A106
Y 93 F A107
R 94 N A108
A 95 N A109
G 96 G A110
V 97 I A111
R 98 D A112
N 99 A A113
F 100 F A114
L 101 Y A115
A 102 A A116
E 103 R A117
A 104 C A118
K 105 E A119
A 106 Q A120
S 107 V A121
G 108 G A122
V 109 V A123
D 110 D A124
G 111 S A125
I 112 V A126
L 113 L A127
V 114 V A128
V 115 A A129
D 116 D A130
L 117 V A131
P 118 P A132
V 119 V A133
F 120 E A134
H 121 E A135
A 122 S A136
K 123 A A137
E 124 P A138
F 125 F A139
T 126 R A140
E 127 Q A141
I 128 A A142
A 129 A A143
R 130 L A144
E 131 R A145
E 132 H A146
G 133 N A147
I 134 I A148
K 135 A A149
T 136 P A150
V 137 I A151
F 138 F A152
L 139 I A153
A 140 C A154
A 141 P A155
P 142 P A156
N 143 N A157
T 144 A A158
P 145 D A159
D 146 D A160
E 147 D A161
R 148 L A162
L 149 L A163
K 150 R A164
V 151 Q A165
I 152 V A166
D 153 A A167
D 154 S A168
M 155 Y A169
T 156 G A170
T 157 R A171
G 158 G A172
F 159 Y A173
V 160 T A174
Y 161 Y A175
L 162 L A176
V 163 L A177
S 164 S A178
L 165 R A179
Y 166 S A180
G 167 G A181
T 168 V A182
T 169 T A183
G 170 G A184
A 171 A A185
R 172 E A186
E 173 N A187
E 174 R A188
I 175 G A189
T 178 P A192
A 179 L A193
Y 180 H A194
D 181 H A195
L 182 L A196
L 183 I A197
R 184 E A198
R 185 K A199
A 186 L A200
K 187 K A201
R 188 E A202
I 189 Y A203
C 190 H A204
R 191 A A205
N 192 A A206
K 193 P A207
V 194 A A208
A 195 L A209
V 196 Q A210
G 197 G A211
F 198 F A212
G 199 G A213
V 200 I A214
S 201 S A215
K 202 S A216
R 203 P A217
E 204 E A218
H 205 Q A219
V 206 V A220
V 207 S A221
S 208 A A222
L 209 A A223
L 210 V A224
K 211 R A225
E 212 A A226
G 213 G A227
A 214 A A228
N 215 A A229
G 216 G A230
V 217 A A231
V 218 I A232
V 219 S A233
G 220 G A234
S 221 S A235
A 222 A A236
L 223 I A237
V 224 V A238
K 225 K A239
I 226 I A240
I 227 I A241
G 228 E A242
E 229 K A243
K 230 N A244
G 231 L A245
R 232 A A246
E 233 S A247
A 234 P A248
T 235 K A249
E 236 Q A250
F 237 M A251
L 238 L A252
K 239 A A253
K 240 E A254
K 241 L A255
V 242 R A256
E 243 S A257
E 244 F A258
L 245 V A259
L 246 S A260
G 247 A A261
I 248 M A262
TER
END


